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0.13.0-rc1
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Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
_
__init__() (nipype.caching.memory.Memory method)
(nipype.caching.memory.PipeFunc method)
,
[1]
(nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.NipypeInterfaceError method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.Str method)
(nipype.interfaces.base.Stream method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.interfaces.matlab.MatlabInputSpec method)
(nipype.pipeline.engine.base.EngineBase method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
(nipype.pipeline.engine.workflows.Workflow method)
A
ACompCor
ACPCTransform
add_class_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
add_nodes() (nipype.pipeline.engine.workflows.Workflow method)
add_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
add_trait_category() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
add_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
AddCSVColumn
AddCSVRow
AddNoise
AddScalarVolumes
AddXFormToHeader
AffineRegistration
AFNItoNIFTI
aggregate_outputs() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
all_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Allineate
always_run (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
Analyze2nii
AnalyzeHeader
AnalyzeWarp
antsBrainExtraction
antsCorticalThickness
antsIntroduction
AntsJointFusion
Aparc2Aseg
Apas2Aseg
ApplyDeformations
ApplyInverseDeformation
ApplyMask
,
[1]
ApplyTOPUP
ApplyTransform
ApplyTransforms
ApplyTransformsToPoints
ApplyVolTransform
ApplyWarp
,
[1]
ApplyXFM
ApplyXfm
args (nipype.interfaces.base.NipypeInterfaceError attribute)
ArtifactDetect
as_ctrait() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
AssertEqual
Atropos
Autobox
Automask
AutoTcorrelate
Average
AverageAffineTransform
AverageImages
AverageNetworks
AvScale
B
B0Calc
Bandpass
base_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
BaseInterface (class in nipype.interfaces.base)
BaseInterfaceInputSpec (class in nipype.interfaces.base)
BaseTraitedSpec (class in nipype.interfaces.base)
BBox
BBRegister
BDP
Beast
BEDPOSTX5
BestLinReg
BET
Bfc
BigAverage
Binarize
BinaryMaskEditorBasedOnLandmarks
BinaryMaths
Blob
Blur
BlurInMask
BlurToFWHM
BrainExtraction
BrainMask
BRAINSABC
BRAINSAlignMSP
BRAINSClipInferior
BRAINSConstellationDetector
BRAINSConstellationModeler
BRAINSCreateLabelMapFromProbabilityMaps
BRAINSCut
BRAINSDemonWarp
,
[1]
BRAINSEyeDetector
BRAINSFit
,
[1]
BRAINSInitializedControlPoints
BRAINSLandmarkInitializer
BRAINSLinearModelerEPCA
BRAINSLmkTransform
BRAINSMultiSTAPLE
BRAINSMush
BRAINSPosteriorToContinuousClass
BRAINSResample
,
[1]
BRAINSResize
BRAINSROIAuto
,
[1]
BRAINSSnapShotWriter
BRAINSTalairach
BRAINSTalairachMask
BRAINSTransformConvert
BRAINSTransformFromFiducials
BRAINSTrimForegroundInDirection
BrickStat
Bru2
Bse
BSplineDeformableRegistration
BSplineToDeformationField
BuildConnectome
buildtemplateparallel
Bunch (class in nipype.interfaces.base)
C
C3dAffineTool
cache() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
CALabel
Calc
,
[1]
CalcCoregAffine
CalculateNormalizedMoments
Camino2Trackvis
can_resume (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
CannyEdge
CannySegmentationLevelSetImageFilter
CANormalize
CARegister
CastScalarVolume
Cerebro
CFFConverter
ChangeDataType
CheckerBoardFilter
CheckTalairachAlignment
class_default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
class_editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
class_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
class_trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
class_trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
class_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
class_visible_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
clean_working_directory() (in module nipype.pipeline.engine.utils)
CleanUpOverlapLabels
clear_previous_runs() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
clear_runs_since() (nipype.caching.Memory method)
(nipype.caching.memory.Memory method)
ClipLevel
clone() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
(nipype.pipeline.engine.base.EngineBase method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
(nipype.pipeline.engine.workflows.Workflow method)
clone_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Cluster
cmd (nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
cmdline (nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
CoherenceAnalyzer
CommandLine (class in nipype.interfaces.base)
CommandLineInputSpec (class in nipype.interfaces.base)
compareTractInclusion
CompCor
Complex
ComputeDVARS
ComputeEigensystem
ComputeFractionalAnisotropy
ComputeMask
ComputeMeanDiffusivity
ComputeMeshWarp
ComputeTDI
ComputeTensorTrace
Concatenate
ConcatenateLTA
configure_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Conmat
connect() (nipype.pipeline.engine.workflows.Workflow method)
ConstrainedSphericalDeconvolution
Contrast
ContrastMgr
Convert
ConvertScalarImageToRGB
ConvertWarp
ConvertXFM
Copy
,
[1]
copy_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
copyable_trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
CopyGeom
CopyMeta
Coregister
Cortex
CorticalThickness
count_iterables() (in module nipype.pipeline.engine.utils)
create_editor() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
CreateJacobianDeterminantImage
CreateMatrix
CreateNifti
CreateNodes
CreateTiledMosaic
CreateWarped
CSD
CSVReader
Curvature
CurvatureAnisotropicDiffusion
CurvatureStats
D
DARTEL
DARTELNorm2MNI
DataFinder
DataGrabber
DataSink
Dcm2nii
Dcm2niix
DcmStack
default_traits_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
default_value (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
default_value_type (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
DegreeCentrality
Denoise
DenoiseImage
Despike
Detrend
Dewisp
Dfs
DICOMConvert
DicomImport
DicomToNrrdConverter
dictcopy() (nipype.interfaces.base.Bunch method)
DiffusionTensorScalarMeasurements
DiffusionTensorStreamlineTrack
DiffusionWeightedVolumeMasking
DilateImage
,
[1]
DilateMask
DipyBaseInterface
DipyDiffusionInterface
Directions2Amplitude
disconnect() (nipype.pipeline.engine.workflows.Workflow method)
Distance
,
[1]
DistanceMap
DistanceMaps
DT2NIfTI
DTI
dtiaverage
dtiestim
DTIexport
DTIFit
,
[1]
DTIimport
dtiprocess
DTIRecon
DTITracker
DTLUTGen
DTMetric
Dump
DumpBinaryTrainingVectors
DWI2SphericalHarmonicsImage
DWI2Tensor
DWICompare
DWIConvert
DWIJointRicianLMMSEFilter
DWIRicianLMMSEFilter
DWISimpleCompare
DWIToDTIEstimation
DWIUnbiasedNonLocalMeansFilter
DynamicTraitedSpec (class in nipype.interfaces.base)
E
ECM
Eddy
EddyCorrect
edit_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
editable_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
editor (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
EditTransform
EditWMwithAseg
EMRegister
EMSegmentCommandLine
EMSegmentTransformToNewFormat
EngineBase (class in nipype.pipeline.engine.base)
EPIDeWarp
EpiReg
Erode
ErodeImage
,
[1]
error() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
ErrorMap
ESLR
EstimateContrast
,
[1]
EstimateFOD
EstimateModel
EstimateResponseForSH
EstimateResponseSH
EulerNumber
Eval
evaluate_connect_function() (in module nipype.pipeline.engine.utils)
expand_iterables() (in module nipype.pipeline.engine.utils)
ExpertAutomatedRegistration
export() (nipype.pipeline.engine.workflows.Workflow method)
export_graph() (in module nipype.pipeline.engine.utils)
Extract
ExtractMainComponent
extractNrrdVectorIndex
ExtractROI
ExtractSkeleton
F
FactorialDesign
FAST
fast_validate (nipype.interfaces.base.Str attribute)
fcsv_to_hdf5
FEAT
FEATModel
FEATRegister
fiberprocess
fiberstats
fibertrack
FiducialRegistration
fileno() (nipype.interfaces.base.Stream method)
FILMGLS
FilterRegressor
FilterTracks
Fim
FindCenterOfBrain
FindShPeaks
FindTheBiggest
FIRST
FitGLM
FitMSParams
FitTensor
FixTopology
FLAMEO
FlippedDifference
FLIRT
FmriRealign4d
FNIRT
format_dot() (in module nipype.pipeline.engine.utils)
format_node() (in module nipype.pipeline.engine.utils)
Fourier
FramewiseDisplacement
FreeSurferSource
FUGUE
full_info() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
fullname (nipype.pipeline.engine.base.EngineBase attribute)
(nipype.pipeline.engine.nodes.JoinNode attribute)
(nipype.pipeline.engine.nodes.MapNode attribute)
(nipype.pipeline.engine.nodes.Node attribute)
(nipype.pipeline.engine.workflows.Workflow attribute)
Function
FuseSegmentations
FuzzyOverlap
,
[1]
FWHMx
G
GaussianBlurImageFilter
Generate5tt
generate_expanded_graph() (in module nipype.pipeline.engine.utils)
GenerateBrainClippedImage
GenerateCsfClippedFromClassifiedImage
GenerateDirections
GenerateEdgeMapImage
GenerateLabelMapFromProbabilityMap
GeneratePurePlugMask
GenerateSummedGradientImage
GenerateTestImage
GenerateWhiteMatterMask
Gennlxfm
GenWarpFields
get() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_all_files() (in module nipype.pipeline.engine.utils)
get_default_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
get_dependencies() (in module nipype.interfaces.base)
get_editor() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
get_hashval() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_levels() (in module nipype.pipeline.engine.utils)
get_matlab_command() (in module nipype.interfaces.matlab)
get_max_resources_used() (in module nipype.interfaces.base)
get_node() (nipype.pipeline.engine.workflows.Workflow method)
get_output() (nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
get_print_name() (in module nipype.pipeline.engine.utils)
get_subnodes() (nipype.pipeline.engine.nodes.MapNode method)
get_traitsfree() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
get_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
GLM
GLMFit
GradientAnisotropicDiffusion
GradientAnisotropicDiffusionImageFilter
GrayscaleFillHoleImageFilter
GrayscaleGrindPeakImageFilter
GrayscaleModelMaker
GroupAndStack
gtractAnisotropyMap
gtractAverageBvalues
gtractClipAnisotropy
gtractConcatDwi
gtractCopyImageOrientation
gtractCoRegAnatomy
gtractCoregBvalues
gtractCostFastMarching
gtractCreateGuideFiber
gtractFastMarchingTracking
gtractFiberTracking
gtractImageConformity
gtractInvertBSplineTransform
gtractInvertDisplacementField
gtractInvertRigidTransform
gtractResampleAnisotropy
gtractResampleB0
gtractResampleCodeImage
gtractResampleDWIInPlace
gtractResampleFibers
gtractTensor
gtractTransformToDisplacementField
Gunzip
H
HammerAttributeCreator
HARDIMat
has_items (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
has_metadata() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
has_traits_interface() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
hash_exists() (nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
help() (nipype.interfaces.base.BaseInterface class method)
(nipype.interfaces.base.CommandLine class method)
(nipype.interfaces.base.Interface class method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
Hemisplit
Hist
HistogramMatching
HistogramMatchingFilter
I
ICC
IdentityInterface
Image2Voxel
ImageLabelCombine
ImageMaths
ImageMeants
ImageRegionPlotter
ImageStats
,
[1]
info() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
info_text (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
info_trait (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
init() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
inner_traits() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
input_spec (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
InputMultiPath (class in nipype.interfaces.base)
inputs (nipype.pipeline.engine.base.EngineBase attribute)
(nipype.pipeline.engine.nodes.JoinNode attribute)
(nipype.pipeline.engine.nodes.MapNode attribute)
(nipype.pipeline.engine.nodes.Node attribute)
(nipype.pipeline.engine.workflows.Workflow attribute)
insertMidACPCpoint
IntensityDifferenceMetric
interface
Interface (class in nipype.interfaces.base)
interface (nipype.pipeline.engine.nodes.JoinNode attribute)
(nipype.pipeline.engine.nodes.MapNode attribute)
(nipype.pipeline.engine.nodes.Node attribute)
InterfaceResult (class in nipype.interfaces.base)
InvWarp
IOBase
is_mapped (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
is_valid() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
IsotropicSmooth
items() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
items_event() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
iteritems() (nipype.interfaces.base.Bunch method)
itername (nipype.pipeline.engine.base.EngineBase attribute)
(nipype.pipeline.engine.nodes.JoinNode attribute)
(nipype.pipeline.engine.nodes.MapNode attribute)
(nipype.pipeline.engine.nodes.Node attribute)
(nipype.pipeline.engine.workflows.Workflow attribute)
J
Jacobian
JistBrainMgdmSegmentation
JistBrainMp2rageDuraEstimation
JistBrainMp2rageSkullStripping
JistBrainPartialVolumeFilter
JistCortexSurfaceMeshInflation
JistIntensityMp2rageMasking
JistLaminarProfileCalculator
JistLaminarProfileGeometry
JistLaminarProfileSampling
JistLaminarROIAveraging
JistLaminarVolumetricLayering
joinfield (nipype.pipeline.engine.nodes.JoinNode attribute)
JoinNode (class in nipype.pipeline.engine.nodes)
joinsource (nipype.pipeline.engine.nodes.JoinNode attribute)
JointFusion
JointHistogram
JSONFileGrabber
JSONFileSink
L
L2Model
Label2Annot
Label2Label
Label2Vol
LabelConfig
LabelMapSmoothing
landmarksConstellationAligner
landmarksConstellationWeights
LaplacianThickness
Level1Design
,
[1]
LFCD
LinearRegistration
LinRecon
list_node_names() (nipype.pipeline.engine.workflows.Workflow method)
load() (nipype.pipeline.engine.base.EngineBase method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
(nipype.pipeline.engine.workflows.Workflow method)
load_inputs_from_json() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
load_template() (in module nipype.interfaces.base)
LookupMeta
M
make_output_dir() (in module nipype.pipeline.engine.utils)
MakeAverageSubject
MakeDyadicVectors
MakeSurfaces
MapNode (class in nipype.pipeline.engine.nodes)
Maskave
MaskScalarVolume
MaskTool
Math
MathsCommand
Matlab2CSV
MatlabCommand (class in nipype.interfaces.matlab)
MatlabInputSpec (class in nipype.interfaces.matlab)
maxcurvature
MaxImage
MCFLIRT
MeanImage
Means
MedianFilter3D
MedianImageFilter
MedicAlgorithmImageCalculator
MedicAlgorithmLesionToads
MedicAlgorithmMipavReorient
MedicAlgorithmN3
MedicAlgorithmSPECTRE2010
MedicAlgorithmThresholdToBinaryMask
MELODIC
Memory (class in nipype.caching)
(class in nipype.caching.memory)
Merge
,
[1]
,
[2]
merge_bundles() (in module nipype.pipeline.engine.utils)
merge_dict() (in module nipype.pipeline.engine.utils)
MergeCNetworks
MergeCSVFiles
MergeModels
MergeNifti
MergeROIs
MESD
Mesh2PVE
MeshFix
MeshWarpMaths
message (nipype.interfaces.base.NipypeInterfaceError attribute)
metadata (nipype.interfaces.base.InputMultiPath attribute)
(nipype.interfaces.base.MultiPath attribute)
(nipype.interfaces.base.OutputMultiPath attribute)
(nipype.interfaces.base.Str attribute)
MNIBiasCorrection
ModelFit
ModelMaker
ModelToLabelMap
modify_paths() (in module nipype.pipeline.engine.utils)
ModifyAffine
modules
MotionOutliers
MpiCommandLine (class in nipype.interfaces.base)
MpiCommandLineInputSpec (class in nipype.interfaces.base)
MPRtoMNI305
MRConvert
MRIConvert
MRIFill
MRIMarchingCubes
MRIPretess
MRIsCALabel
MRIsCalc
MRIsConvert
MRIsInflate
MRISPreproc
MRISPreprocReconAll
MRITessellate
MRMultiply
MRTransform
MRTrix2TrackVis
MRTrix3Base
MRTrixViewer
MS_LDA
MultiImageMaths
MultiPath (class in nipype.interfaces.base)
MultipleRegressDesign
MultipleRegressionDesign
MultiplyImages
MultiplyScalarVolumes
MultiResolutionAffineRegistration
MySQLSink
N
N4BiasFieldCorrection
N4ITKBiasFieldCorrection
NeighborhoodMean
NeighborhoodMedian
NetworkBasedStatistic
NetworkXMetrics
NewSegment
next() (nipype.caching.memory.Memory method)
(nipype.caching.memory.PipeFunc method)
(nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.base.Stream method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.pipeline.engine.base.EngineBase method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
(nipype.pipeline.engine.workflows.Workflow method)
NIfTIDT2Camino
NiftiGeneratorBase
nipype.algorithms.confounds (module)
nipype.algorithms.icc (module)
nipype.algorithms.misc (module)
nipype.algorithms.modelgen (module)
nipype.caching.memory (module)
nipype.interfaces.base (module)
nipype.interfaces.brainsuite.brainsuite (module)
nipype.interfaces.cmtk.cmtk (module)
nipype.interfaces.cmtk.nbs (module)
nipype.interfaces.cmtk.nx (module)
nipype.interfaces.cmtk.parcellation (module)
nipype.interfaces.dcmstack (module)
nipype.interfaces.dipy.preprocess (module)
nipype.interfaces.freesurfer.utils (module)
nipype.interfaces.io (module)
nipype.interfaces.matlab (module)
nipype.interfaces.minc.base (module)
nipype.interfaces.minc.testdata (module)
nipype.interfaces.mrtrix.convert (module)
nipype.interfaces.mrtrix.tensors (module)
nipype.interfaces.vtkbase (module)
nipype.pipeline.engine.base (module)
nipype.pipeline.engine.nodes (module)
nipype.pipeline.engine.utils (module)
nipype.pipeline.engine.workflows (module)
nipype.pkg_info (module)
nipype.workflows.data (module)
nipype.workflows.dmri.camino.connectivity_mapping (module)
nipype.workflows.dmri.camino.diffusion (module)
nipype.workflows.dmri.camino.group_connectivity (module)
nipype.workflows.dmri.connectivity.group_connectivity (module)
nipype.workflows.dmri.connectivity.nx (module)
nipype.workflows.dmri.dipy.denoise (module)
nipype.workflows.dmri.fsl.artifacts (module)
nipype.workflows.dmri.fsl.dti (module)
nipype.workflows.dmri.fsl.epi (module)
nipype.workflows.dmri.fsl.tbss (module)
nipype.workflows.dmri.fsl.utils (module)
nipype.workflows.dmri.mrtrix.connectivity_mapping (module)
nipype.workflows.dmri.mrtrix.diffusion (module)
nipype.workflows.dmri.mrtrix.group_connectivity (module)
nipype.workflows.fmri.fsl.estimate (module)
nipype.workflows.fmri.fsl.preprocess (module)
nipype.workflows.fmri.spm.preprocess (module)
nipype.workflows.misc.utils (module)
nipype.workflows.rsfmri.fsl.resting (module)
nipype.workflows.smri.ants.ANTSBuildTemplate (module)
nipype.workflows.smri.ants.antsRegistrationBuildTemplate (module)
nipype.workflows.smri.freesurfer.autorecon1 (module)
nipype.workflows.smri.freesurfer.autorecon2 (module)
nipype.workflows.smri.freesurfer.bem (module)
nipype.workflows.smri.freesurfer.recon (module)
nipype.workflows.smri.freesurfer.utils (module)
NipypeInterfaceError (class in nipype.interfaces.base)
NlpFit
node
Node (class in nipype.pipeline.engine.nodes)
Norm
Normalize
,
[1]
Normalize12
NormalizeProbabilityMapSet
Notes
num_subnodes() (nipype.pipeline.engine.nodes.MapNode method)
O
ODFRecon
ODFTracker
on_trait_change() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
on_trait_event() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
OneSampleTTest
OneSampleTTestDesign
OrientScalarVolume
OtsuThresholdImageFilter
OtsuThresholdSegmentation
OutlierCount
output_dir() (nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
output_spec (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
OutputMultiPath (class in nipype.interfaces.base)
outputs (nipype.pipeline.engine.base.EngineBase attribute)
(nipype.pipeline.engine.nodes.JoinNode attribute)
(nipype.pipeline.engine.nodes.MapNode attribute)
(nipype.pipeline.engine.nodes.Node attribute)
(nipype.pipeline.engine.workflows.Workflow attribute)
Overlap
,
[1]
Overlay
P
P2PDistance
Paint
PairedTTestDesign
Parcellate
ParcellationStats
ParseDICOMDir
PETPVC
PETStandardUptakeValueComputation
Pialmesh
PickAtlas
PicoPDFs
Pik
PipeFunc (class in nipype.caching.memory)
,
[1]
pipeline
PlotMotionParams
PlotTimeSeries
PointsWarp
PowerSpectrum
PRELUDE
PrepareFieldmap
print_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
ProbabilisticSphericallyDeconvolutedStreamlineTrack
ProbeVolumeWithModel
ProbTrackX
ProbTrackX2
ProcStreamlines
ProjThresh
Pvc
Q
QBallMX
QualityIndex
R
raise_exception() (nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
Randomise
RandomVol
read() (nipype.interfaces.base.Stream method)
read_log() (in module nipype.caching.memory)
Realign
ReconAll
references_ (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
Refit
Register
RegisterAVItoTalairach
Registration
,
[1]
RelabelHypointensities
remove_nodes() (nipype.pipeline.engine.workflows.Workflow method)
remove_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
remove_trait_listener() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
RemoveIntersection
RemoveNeck
Rename
Reorient2Std
repr() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
Resample
,
[1]
,
[2]
,
[3]
ResampleDTIVolume
ResampleScalarVectorDWIVolume
ResampleScalarVolume
reset_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Reshape
Reslice
ResliceToReference
ResponseSD
RESTORE
result (nipype.pipeline.engine.nodes.JoinNode attribute)
(nipype.pipeline.engine.nodes.MapNode attribute)
(nipype.pipeline.engine.nodes.Node attribute)
Retroicor
RigidRegistration
rm_all_but() (in module nipype.caching.memory)
RobustFOV
RobustRegister
RobustStatisticsSegmenter
RobustTemplate
ROIGen
ROIStats
run() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.Interface method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
(nipype.pipeline.engine.workflows.Workflow method)
run_command() (in module nipype.interfaces.base)
S
S3DataGrabber
SampleToSurface
save() (nipype.pipeline.engine.base.EngineBase method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
(nipype.pipeline.engine.workflows.Workflow method)
save_inputs_to_json() (nipype.interfaces.base.BaseInterface method)
(nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
scalartransform
Scrubmask
Seg
Segment
SegmentCC
SegmentWM
SegStats
SegStatsReconAll
Select
SelectFiles
SEMLikeCommandLine (class in nipype.interfaces.base)
set() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.Bunch method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
set_default_matlab_cmd() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_mfile() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_paths() (nipype.interfaces.matlab.MatlabCommand class method)
set_default_terminal_output() (nipype.interfaces.base.CommandLine class method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
set_input() (nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
set_trait_dispatch_handler() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
set_value() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
SFLUTGen
SFPeaks
SFPICOCalibData
Shredder
ShuffleVectorsModule
SigLoss
,
[1]
SignalExtraction
Similarity
,
[1]
SimilarityIndex
SimpleRegionGrowingSegmentation
SimpleThreshold
SimulateMultiTensor
Skullfinder
SkullStrip
Slicer
SlicerCommandLine
,
[1]
SliceTimer
SliceTiming
SMM
Smooth
,
[1]
,
[2]
SmoothEstimate
SmoothTessellation
SpaceTimeRealigner
SpatialFilter
SpecifyModel
SpecifySparseModel
SpecifySPMModel
Sphere
SphericalAverage
SphericallyDeconvolutedStreamlineTrack
SplineFilter
Split
,
[1]
SplitNifti
SplitROIs
SQLiteSink
SSHDataGrabber
STAPLEAnalysis
StdImage
StdOutCommandLine (class in nipype.interfaces.base)
StdOutCommandLineInputSpec (class in nipype.interfaces.base)
StimulusCorrelation
Str (class in nipype.interfaces.base)
Stream (class in nipype.interfaces.base)
StreamlineTrack
StreamlineTractography
SubtractScalarVolumes
Surface2VolTransform
SurfaceSmooth
SurfaceSnapshots
SurfaceTransform
SUSAN
SVMTest
SVMTrain
SVReg
SwapDimensions
sync_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
synchronize_iterables() (in module nipype.pipeline.engine.utils)
SynthesizeFLASH
T
TalairachAVI
TalairachQC
Tca
TCat
TCK2VTK
TCompCor
TCorr1D
TCorrelate
TCorrMap
TemporalFilter
Tensor2ApparentDiffusion
Tensor2FractionalAnisotropy
Tensor2Vector
TensorMetrics
TensorMode
TextureFromNoiseImageFilter
TextureMeasureFilter
ThicknessPVC
Threshold
,
[1]
,
[2]
ThresholdScalarVolume
ThresholdStatistics
Tkregister2
To3D
ToEcat
topological_sort() (in module nipype.pipeline.engine.utils)
TOPUP
ToRaw
Track
TrackBallStick
TrackBayesDirac
TrackBedpostxDeter
TrackBedpostxProba
TrackBootstrap
TrackDensityMap
TrackDT
TrackMerge
TrackPICo
Tracks2Prob
Trackvis2Camino
Tractography
TractographyLabelMapSeeding
TractShredder
TractSkeleton
trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_context() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_get() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_items_event() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_monitor() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_names() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_property_changed() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_set() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_setq() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_subclasses() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_view() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_view_elements() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
trait_views() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
TraitedSpec (class in nipype.interfaces.base)
traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
traits_init() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
traits_inited() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Trim
TShift
TSNR
,
[1]
TStat
TVTKBaseInterface
TwoSampleTTestDesign
U
UKFTractography
UnaryMaths
UnbiasedNonLocalMeans
UnpackSDICOMDir
update() (nipype.interfaces.base.Bunch method)
(nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
V
validate() (nipype.interfaces.base.InputMultiPath method)
(nipype.interfaces.base.MultiPath method)
(nipype.interfaces.base.OutputMultiPath method)
(nipype.interfaces.base.Str method)
validate_trait() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
VBMSegment
VBRAINSDemonWarp
,
[1]
VecReg
version (nipype.interfaces.base.BaseInterface attribute)
(nipype.interfaces.base.CommandLine attribute)
(nipype.interfaces.base.Interface attribute)
(nipype.interfaces.base.MpiCommandLine attribute)
(nipype.interfaces.base.SEMLikeCommandLine attribute)
(nipype.interfaces.base.StdOutCommandLine attribute)
(nipype.interfaces.matlab.MatlabCommand attribute)
version_from_command() (nipype.interfaces.base.CommandLine method)
(nipype.interfaces.base.MpiCommandLine method)
(nipype.interfaces.base.SEMLikeCommandLine method)
(nipype.interfaces.base.StdOutCommandLine method)
(nipype.interfaces.matlab.MatlabCommand method)
visible_traits() (nipype.interfaces.base.BaseInterfaceInputSpec method)
(nipype.interfaces.base.BaseTraitedSpec method)
(nipype.interfaces.base.CommandLineInputSpec method)
(nipype.interfaces.base.DynamicTraitedSpec method)
(nipype.interfaces.base.MpiCommandLineInputSpec method)
(nipype.interfaces.base.StdOutCommandLineInputSpec method)
(nipype.interfaces.base.TraitedSpec method)
(nipype.interfaces.matlab.MatlabInputSpec method)
Vnifti2Image
Volcentre
Voliso
Volpad
Volreg
VolSymm
VolumeMask
VotingBinaryHoleFillingImageFilter
VtkStreamlines
VtoMat
W
walk() (in module nipype.pipeline.engine.utils)
walk_files() (in module nipype.pipeline.engine.utils)
walk_outputs() (in module nipype.pipeline.engine.utils)
Warp
WarpImageMultiTransform
WarpPoints
,
[1]
WarpPointsToStd
WarpTimeSeriesImageMultiTransform
WarpUtils
WatershedBEM
WatershedSkullStrip
workflow
Workflow (class in nipype.pipeline.engine.workflows)
wrappers (nipype.interfaces.base.BaseInterfaceInputSpec attribute)
(nipype.interfaces.base.BaseTraitedSpec attribute)
(nipype.interfaces.base.CommandLineInputSpec attribute)
(nipype.interfaces.base.DynamicTraitedSpec attribute)
(nipype.interfaces.base.MpiCommandLineInputSpec attribute)
(nipype.interfaces.base.StdOutCommandLineInputSpec attribute)
(nipype.interfaces.base.TraitedSpec attribute)
(nipype.interfaces.matlab.MatlabInputSpec attribute)
write_graph() (nipype.pipeline.engine.workflows.Workflow method)
write_hierarchical_dotfile() (nipype.pipeline.engine.workflows.Workflow method)
write_report() (nipype.pipeline.engine.nodes.JoinNode method)
(nipype.pipeline.engine.nodes.MapNode method)
(nipype.pipeline.engine.nodes.Node method)
write_workflow_prov() (in module nipype.pipeline.engine.utils)
X
XFibres5
XfmAvg
XfmConcat
XfmInvert
XNATSink
XNATSource
Z
ZCutUp
