workflows.dmri.dipy.denoise

nlmeans_pipeline()

Link to code

Workflow that performs nlmeans denoising

Example

>>> from nipype.workflows.dmri.dipy.denoise import nlmeans_pipeline
>>> denoise = nlmeans_pipeline()
>>> denoise.inputs.inputnode.in_file = 'diffusion.nii'
>>> denoise.inputs.inputnode.in_mask = 'mask.nii'
>>> denoise.run() 

Graph

bg_mask()

Link to code

Rough mask of background from brain masks

csf_mask()

Link to code

Artesanal mask of csf in T2w-like images