Diffusion Estimation

caps.diffusion_estimation: User Guide

Some live exemples containing useful snippet of codes.

py_tensor_estimation.pilot_fourth_order	Fourth Order Tensor Estimation
py_tensor_estimation.pilot_second_order	Second Order Tensor Estimation
fsl_tensor_estimation.pilot	FSL Second Order Tensor Estimation

caps.diffusion_estimation: API

The exact API of all functions and classes, as given by the docstrings. For the user guide see the diffusion_estimation_ug section for further details.

Pipelines

fsl_tensor_estimation.FSLTensorEstimation	FSL Second Order Tensor Estimation
py_tensor_estimation.FourthOrderTensorEstimation	Fourth Order Tensor Estimation
py_tensor_estimation.SecondOrderTensorEstimation	Second Order Tensor Estimation

Buildingblocks

tensor_estimation.LSTensorEstimation	Ordinary least square tensor fiting
tensor_estimation.QUARTICTensorEstimation	Fits a diffusion tensor given diffusion-weighted signals and
tensor_scalars.FourthOrderScalarParameters	Compute the Generalized Anisotropy (GA) and
tensor_scalars.SecondOrderScalarParameters	Compute the Fractional Anisotropy [1]_ (FA),
tensor_utils.DecomposeSecondOrderTensor	Compute the eigenvalues and eigenvectors of a given diffusion tensor.