This documentation is for CAPS version 0.0.1

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caps.diffusion_estimation.tensor_scalars.FourthOrderScalarParameters

FourthOrderScalarParameters

class caps.diffusion_estimation.tensor_scalars.FourthOrderScalarParameters[source]

Compute the Generalized Anisotropy (GA) and Meand Diffusivity (MD) of fourth order tensors.

Inputs

[Mandatory]

mask_file: a file name (mandatory)
a mask image
tensor_file: a file name (mandatory)
a fourth order tensor model

[Optional]

ga_basename: a string (optional)
the basename of the output ga file
md_basename: a string (optional)
the basename of the output md file
output_directory: a directory name (optional)
the output directory where the tensor scalars will be written

Outputs

generalized_anisotropy_file: a file name
the name of the output fa file
mean_diffusivity_file: a file name
the name of the output md file