Preclinic Functional

caps.preclinic_functional: User Guide

Some live exemples containing useful snippet of codes.

spm_realignment.pilot	"""
spm_coregistration.pilot	"""
spm_new_segment.pilot	"""
bet.pilot	"""
spm_preproc.pilot	"""
slice_timing.pilot	""" Slice Timing Tool
spm_normalization.pilot	"""
spm_segment.pilot	"""
spm_smoothing.pilot	"""

caps.preclinic_functional: API

The exact API of all functions and classes, as given by the docstrings. For the user guide see the preclinic_functional_ug section for further details.

Pipelines

bet.BET	BET
slice_timing.SliceTiming
spm_coregistration.Coregistration	Coregistration Pipeline.
spm_new_segment.SPMNewSegment	SPM structural and functional normalization to template.
spm_normalization.Normalization	SPM structural and functional normalization to template.
spm_preproc.SPMPreproc
spm_realignment.Realignment	Realignement Pipeline
spm_segment.SPMSegment	SPM structural and functional normalization to template.
spm_smoothing.Smoothing	SPM Smoothing

Buildingblocks

slice_timing.FSLSaveCustomTimings	Process to save the cutom timings on disk
slice_timing.InputDataManager	Process that enables us to get image informations:
slice_timing.OutputDataManager	Process that format the fonctional slice time corrected image
spm_coregistration.InputDataManager	Process that copy and ungzip the fonctional image.
spm_coregistration.OutputDataManager	Process that format the fonctional slice time corrected image
spm_new_segment.InputDataManager	Process that copy and ungzip the image.
spm_new_segment.ListDataManager	Process that put an image to a list
spm_new_segment.OutputDataManager	Process that zip the output image.
spm_realignment.InputDataManager	Process that copy and ungzip the fonctional image.
spm_realignment.OutputDataManager	Process that format the fonctional slice time corrected image
spm_segment.InputDataManager	Process that copy and ungzip the image.
spm_segment.ListDataManager	Process that put an image to a list
spm_segment.OutputDataManager	Process that zip the output image.
spm_smoothing.InputDataManager	Process that copy and ungzip the image.
spm_smoothing.OutputDataManager	Process that zip the output image.