caps.preclinic_functional.bet.BET¶

BET¶

class caps.preclinic_functional.bet.BET(autoexport_nodes_parameters=True, **kwargs)[source]¶

BET

Brain Extraction Tool

[Mandatory]

input_file: a file name (mandatory)

input file to skull strip

[Optional]

bet_threshold: a float (optional)

fractional intensity threshold

generate_binary_mask: a boolean (optional)

create binary mask image

generate_mesh: a boolean (optional)

generate a vtk mesh brain surface

generate_skull: a boolean (optional)

create skull image

use_4d_input: a boolean (optional)

apply to 4D fMRI data

bet_inskull_mask_file: a file name

path/name of inskull mask (if generated)

bet_inskull_mesh_file: a file name

path/name of inskull mesh outline (if generated)

bet_mask_file: a file name

path/name of binary brain mask (if generated)

bet_meshfile: a file name

path/name of vtk mesh file (if generated)

bet_out_file: a file name

path/name of skullstripped file (if generated)

bet_outskin_mask_file: a file name

path/name of outskin mask (if generated)

bet_outskin_mesh_file: a file name

path/name of outskin mesh outline (if generated)

bet_outskull_mask_file: a file name

path/name of outskull mask (if generated)

bet_outskull_mesh_file: a file name

path/name of outskull mesh outline (if generated)

bet_skull_mask_file: a file name

path/name of skull mask (if generated)