caps.diffusion_estimation.fsl_tensor_estimation.FSLTensorEstimation¶

FSLTensorEstimation¶

class caps.diffusion_estimation.fsl_tensor_estimation.FSLTensorEstimation(autoexport_nodes_parameters=True, **kwargs)[source]¶

FSL Second Order Tensor Estimation

Fit the diffusion tensor model using FSL DTIFit. For more details on this method, see the DTIFit Documentation.

[Mandatory]

bvals: a file name (mandatory)

b values file

bvecs: a file name (mandatory)

b vectors file

dw_image: a file name (mandatory)

diffusion weighted image data file

mask: a file name (mandatory)

bet binary mask file

[Optional]

fractional_anisotropy: a file name

path/name of file with the fractional anisotropy

mean_diffusivity: a file name

path/name of file with the mean diffusivity

tensor: a file name

path/name of file with the 4D tensor volume