neurom.view.view.plot_tree

neurom.view.view.plot_tree(ax, tree, plane='xy', diameter_scale=1.0, linewidth=1.2, color=None, alpha=0.8)

Plots a 2d figure of the tree’s segments

Parameters:

• ax (matplotlib axes) – on what to plot
• tree (neurom.core.Tree or neurom.core.Neurite) – plotted tree
• plane (str) – Any pair of ‘xyz’
• diameter_scale (float) – Scale factor multiplied with segment diameters before plotting
• linewidth (float) – all segments are plotted with this width, but only if diameter_scale=None
• color (str or None) – Color of plotted values, None corresponds to default choice
• alpha (float) – Transparency of plotted values

Note

If the tree contains one single point the plot will be empty since no segments can be constructed.