NeuroM 1.4.2

NeuroM is a Python-based toolkit for the analysis and processing of neuron morphologies.

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Contents

• NeuroM Quick-Start
  • Install
  • Analyze, visualize, and check
• Applications
  • morph_check: the morphology checker
  • morph_stats: morphometric statistics extraction
  • Features
• NeuroM morphology definitions
  • Point
  • Segment
  • Section
  • Soma
  • Neurite tree
  • Neuron
• Code Documentation
  • Public API
  • Developer API
• Supported file formats
  • SWC
  • HDF5
  • NeuroLucida (experimental)
• Installation
  • Install from the official PyPI server
  • Install from git
  • Install from source
  • Virtualenv setup
• Examples
  • Fast analysis with neurom
  • Morphology visualization with the neurom.viewer module
  • Advanced iterator-based feature extraction example
  • Getting Log Information
• Reporting issues
• Developer Documentation
  • Development Workflow
  • Running the tests
  • Building the Documentation
  • Python compatibility
• Dependencies
  • Build and runtime
  • Installing and building
  • Testing and documentation
• License

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Indices and tables

• Index
• Module Index
• Search Page