neurom.check.neuron_checksΒΆ
NeuroM neuron checking functions.
Contains functions for checking validity of neuron neurites and somata. Tests assumes neurites and/or soma have been succesfully built where applicable, i.e. soma- and neurite-related structural tests pass.
Functions
has_all_monotonic_neurites |
Check that a neuron has only neurites that are monotonic |
has_all_nonzero_neurite_radii |
Check presence of neurite points with radius not above threshold |
has_all_nonzero_section_lengths |
Check presence of neuron sections with length not above threshold |
has_all_nonzero_segment_lengths |
Check presence of neuron segments with length not above threshold |
has_apical_dendrite |
Check if a neuron has apical dendrites |
has_axon |
Check if a neuron has an axon |
has_basal_dendrite |
Check if a neuron has basal dendrites |
has_no_fat_ends |
Check if leaf points are too large |
has_no_flat_neurites |
Check that a neuron has no flat neurites |
has_no_jumps |
Check if there are jumps (large movements in the axis) |
has_nonzero_soma_radius |
Check if soma radius not above threshold |