neurom.check.neuron_checks.has_no_fat_ends¶
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neurom.check.neuron_checks.
has_no_fat_ends
(neuron, multiple_of_mean=2.0, final_point_count=5)[source]¶ Check if leaf points are too large
Parameters: - neuron (Neuron) – The neuron object to test
- multiple_of_mean (float) – how many times larger the final radius
- to be compared to the mean of the final points (has) –
- final_point_count (int) – how many points to include in the mean
Returns: CheckResult with result list of ids bad sections
Note
A fat end is defined as a leaf segment whose last point is larger by a factor of multiple_of_mean than the mean of the points in final_point_count