Python Module Index

t

	t
	TASSELpy
	TASSELpy.data
	TASSELpy.data.data_constants
	TASSELpy.java
	TASSELpy.java.lang
	TASSELpy.java.lang.Boolean
	TASSELpy.java.lang.Byte
	TASSELpy.java.lang.Class
	TASSELpy.java.lang.Comparable
	TASSELpy.java.lang.Double
	TASSELpy.java.lang.Enum
	TASSELpy.java.lang.Float
	TASSELpy.java.lang.Integer
	TASSELpy.java.lang.Iterable
	TASSELpy.java.lang.Long
	TASSELpy.java.lang.Number
	TASSELpy.java.lang.Object
	TASSELpy.java.lang.reflect
	TASSELpy.java.lang.reflect.Array
	TASSELpy.java.lang.Runnable
	TASSELpy.java.lang.String
	TASSELpy.java.lang.Thread
	TASSELpy.java.util
	TASSELpy.java.util.AbstractMap
	TASSELpy.java.util.AbstractSequentialList
	TASSELpy.java.util.ArrayList
	TASSELpy.java.util.Collection
	TASSELpy.java.util.Deque
	TASSELpy.java.util.FilterList
	TASSELpy.java.util.HashMap
	TASSELpy.java.util.Iterator
	TASSELpy.java.util.LinkedList
	TASSELpy.java.util.List
	TASSELpy.java.util.ListIterator
	TASSELpy.java.util.Map
	TASSELpy.java.util.Queue
	TASSELpy.java.util.Set
	TASSELpy.javaObj
	TASSELpy.net
	TASSELpy.net.maizegenetics
	TASSELpy.net.maizegenetics.analysis
	TASSELpy.net.maizegenetics.analysis.association
	TASSELpy.net.maizegenetics.analysis.association.FixedEffectLMPlugin
	TASSELpy.net.maizegenetics.analysis.data
	TASSELpy.net.maizegenetics.analysis.data.IntersectionAlignmentPlugin
	TASSELpy.net.maizegenetics.analysis.data.UnionAlignmentPlugin
	TASSELpy.net.maizegenetics.analysis.distance
	TASSELpy.net.maizegenetics.analysis.distance.IBSDistanceMatrix
	TASSELpy.net.maizegenetics.analysis.distance.Kinship
	TASSELpy.net.maizegenetics.analysis.popgen
	TASSELpy.net.maizegenetics.analysis.popgen.LDResult
	TASSELpy.net.maizegenetics.analysis.popgen.LinkageDisequilibrium
	TASSELpy.net.maizegenetics.dna
	TASSELpy.net.maizegenetics.dna.map
	TASSELpy.net.maizegenetics.dna.map.Chromosome
	TASSELpy.net.maizegenetics.dna.map.Position
	TASSELpy.net.maizegenetics.dna.map.PositionList
	TASSELpy.net.maizegenetics.dna.snp
	TASSELpy.net.maizegenetics.dna.snp.byte2d
	TASSELpy.net.maizegenetics.dna.snp.byte2d.Byte2D
	TASSELpy.net.maizegenetics.dna.snp.CoreGenotypeTable
	TASSELpy.net.maizegenetics.dna.snp.depth
	TASSELpy.net.maizegenetics.dna.snp.depth.AlleleDepth
	TASSELpy.net.maizegenetics.dna.snp.FilterGenotypeTable
	TASSELpy.net.maizegenetics.dna.snp.genotypecall
	TASSELpy.net.maizegenetics.dna.snp.genotypecall.AbstractGenotypeCallTable
	TASSELpy.net.maizegenetics.dna.snp.genotypecall.GenotypeCallTable
	TASSELpy.net.maizegenetics.dna.snp.genotypecall.GenotypeMergeRule
	TASSELpy.net.maizegenetics.dna.snp.GenotypeTable
	TASSELpy.net.maizegenetics.dna.snp.GenotypeTableUtils
	TASSELpy.net.maizegenetics.dna.snp.ImportUtils
	TASSELpy.net.maizegenetics.dna.snp.score
	TASSELpy.net.maizegenetics.dna.snp.score.AlleleProbability
	TASSELpy.net.maizegenetics.dna.snp.score.Dosage
	TASSELpy.net.maizegenetics.dna.snp.score.ReferenceProbability
	TASSELpy.net.maizegenetics.dna.snp.score.SiteScore
	TASSELpy.net.maizegenetics.dna.tag
	TASSELpy.net.maizegenetics.dna.WHICH_ALLELE
	TASSELpy.net.maizegenetics.matrixalgebra
	TASSELpy.net.maizegenetics.matrixalgebra.decomposition
	TASSELpy.net.maizegenetics.matrixalgebra.decomposition.EigenvalueDecomposition
	TASSELpy.net.maizegenetics.matrixalgebra.decomposition.SingularValueDecomposition
	TASSELpy.net.maizegenetics.matrixalgebra.Matrix
	TASSELpy.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrix
	TASSELpy.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrixFactory
	TASSELpy.net.maizegenetics.plugindef
	TASSELpy.net.maizegenetics.plugindef.AbstractPlugin
	TASSELpy.net.maizegenetics.plugindef.DataSet
	TASSELpy.net.maizegenetics.plugindef.Datum
	TASSELpy.net.maizegenetics.plugindef.Plugin
	TASSELpy.net.maizegenetics.plugindef.PluginParameter
	TASSELpy.net.maizegenetics.stats
	TASSELpy.net.maizegenetics.stats.statistics
	TASSELpy.net.maizegenetics.stats.statistics.FisherExact
	TASSELpy.net.maizegenetics.taxa
	TASSELpy.net.maizegenetics.taxa.distance
	TASSELpy.net.maizegenetics.taxa.distance.DistanceMatrix
	TASSELpy.net.maizegenetics.taxa.distance.TaxaListMatrix
	TASSELpy.net.maizegenetics.taxa.TaxaList
	TASSELpy.net.maizegenetics.taxa.TaxaListBuilder
	TASSELpy.net.maizegenetics.taxa.Taxon
	TASSELpy.net.maizegenetics.trait
	TASSELpy.net.maizegenetics.trait.AbstractPhenotype
	TASSELpy.net.maizegenetics.trait.CombinePhenotype
	TASSELpy.net.maizegenetics.trait.FilterPhenotype
	TASSELpy.net.maizegenetics.trait.MarkerPhenotype
	TASSELpy.net.maizegenetics.trait.MarkerPhenotypeAdapter
	TASSELpy.net.maizegenetics.trait.Phenotype
	TASSELpy.net.maizegenetics.trait.ReadPhenotypeUtils
	TASSELpy.net.maizegenetics.trait.SimplePhenotype
	TASSELpy.net.maizegenetics.trait.Trait
	TASSELpy.net.maizegenetics.util
	TASSELpy.net.maizegenetics.util.BitSet
	TASSELpy.net.maizegenetics.util.GeneralAnnotation
	TASSELpy.net.maizegenetics.util.GeneralAnnotationStorage
	TASSELpy.net.maizegenetics.util.OpenBitSet
	TASSELpy.net.maizegenetics.util.ProgressListener
	TASSELpy.net.maizegenetics.util.TableReport
	TASSELpy.net.maizegenetics.util.UnmodifiableBitSet
	TASSELpy.TASSELbridge
	TASSELpy.test
	TASSELpy.test.java
	TASSELpy.test.java.lang
	TASSELpy.test.java.lang.BooleanTest
	TASSELpy.test.java.lang.ByteTest
	TASSELpy.test.java.lang.DoubleTest
	TASSELpy.test.java.lang.FloatTest
	TASSELpy.test.java.lang.IntegerTest
	TASSELpy.test.java.lang.langTestSuite
	TASSELpy.test.java.lang.LongTest
	TASSELpy.test.java.util
	TASSELpy.test.java.util.MapTest
	TASSELpy.test.java.util.utilTestSuite
	TASSELpy.test.javaObjTest
	TASSELpy.test.mainTestSuite
	TASSELpy.test.net
	TASSELpy.test.net.maizegenetics
	TASSELpy.test.net.maizegenetics.analysis
	TASSELpy.test.net.maizegenetics.analysis.analysisTestSuite
	TASSELpy.test.net.maizegenetics.analysis.association
	TASSELpy.test.net.maizegenetics.analysis.association.associationTestSuite
	TASSELpy.test.net.maizegenetics.analysis.association.FixedEffectLMPlugin
	TASSELpy.test.net.maizegenetics.analysis.distance
	TASSELpy.test.net.maizegenetics.analysis.distance.distanceTestSuite
	TASSELpy.test.net.maizegenetics.analysis.distance.KinshipTest
	TASSELpy.test.net.maizegenetics.analysis.IBSDistanceMatrixTest
	TASSELpy.test.net.maizegenetics.analysis.popgen
	TASSELpy.test.net.maizegenetics.analysis.popgen.LDResultTest
	TASSELpy.test.net.maizegenetics.analysis.popgen.LinkageDisequilibriumTest
	TASSELpy.test.net.maizegenetics.analysis.popgen.popgenTestSuite
	TASSELpy.test.net.maizegenetics.dna
	TASSELpy.test.net.maizegenetics.dna.snp
	TASSELpy.test.net.maizegenetics.dna.snp.GenotypeTableTest
	TASSELpy.test.net.maizegenetics.dna.snp.snpTestSuite
	TASSELpy.test.net.maizegenetics.matrixalgebra
	TASSELpy.test.net.maizegenetics.matrixalgebra.decomposition
	TASSELpy.test.net.maizegenetics.matrixalgebra.decomposition.decompositionTestSuite
	TASSELpy.test.net.maizegenetics.matrixalgebra.decomposition.EigenvalueDecompositionTest
	TASSELpy.test.net.maizegenetics.matrixalgebra.decomposition.SingularValueDecompositionTest
	TASSELpy.test.net.maizegenetics.matrixalgebra.Matrix
	TASSELpy.test.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrixFactoryTest
	TASSELpy.test.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrixTest
	TASSELpy.test.net.maizegenetics.matrixalgebra.Matrix.MatrixTestSuite
	TASSELpy.test.net.maizegenetics.stats
	TASSELpy.test.net.maizegenetics.stats.statistics
	TASSELpy.test.net.maizegenetics.stats.statistics.FisherExactTest
	TASSELpy.test.net.maizegenetics.stats.statistics.statisticsTestSuite
	TASSELpy.test.net.maizegenetics.taxa
	TASSELpy.test.net.maizegenetics.taxa.distance
	TASSELpy.test.net.maizegenetics.taxa.distance.DistanceMatrixTest
	TASSELpy.test.net.maizegenetics.taxa.distance.distanceTestSuite
	TASSELpy.test.net.maizegenetics.taxa.distance.TaxaListMatrixTest
	TASSELpy.test.net.maizegenetics.taxa.TaxaListBuilderTest
	TASSELpy.test.net.maizegenetics.taxa.TaxaListTest
	TASSELpy.test.net.maizegenetics.taxa.taxaTestSuite
	TASSELpy.test.net.maizegenetics.taxa.TaxonTest
	TASSELpy.test.net.maizegenetics.trait
	TASSELpy.test.net.maizegenetics.trait.MarkerPhenotypeTest
	TASSELpy.test.net.maizegenetics.trait.PhenotypeTest
	TASSELpy.test.net.maizegenetics.trait.TraitTest
	TASSELpy.test.net.maizegenetics.trait.traitTestSuite
	TASSELpy.test.net.maizegenetics.util
	TASSELpy.test.net.maizegenetics.util.TableReportTest
	TASSELpy.test.net.maizegenetics.util.utilTestSuite
	TASSELpy.test.utils
	TASSELpy.test.utils.cachingTest
	TASSELpy.test.utils.primativeArrayTest
	TASSELpy.test.utils.utilsTestSuite
	TASSELpy.utils
	TASSELpy.utils.caching
	TASSELpy.utils.DocInherit
	TASSELpy.utils.helper
	TASSELpy.utils.OrderedSet
	TASSELpy.utils.Overloading
	TASSELpy.utils.primativeArray