TASSELpy.net package

Subpackages

• TASSELpy.net.maizegenetics package
  • Subpackages
    • TASSELpy.net.maizegenetics.analysis package
      • Subpackages
        • TASSELpy.net.maizegenetics.analysis.association package
          • Submodules
          • TASSELpy.net.maizegenetics.analysis.association.FixedEffectLMPlugin module
          • Module contents
        • TASSELpy.net.maizegenetics.analysis.data package
          • Submodules
          • TASSELpy.net.maizegenetics.analysis.data.IntersectionAlignmentPlugin module
          • TASSELpy.net.maizegenetics.analysis.data.UnionAlignmentPlugin module
          • Module contents
        • TASSELpy.net.maizegenetics.analysis.distance package
          • Submodules
          • TASSELpy.net.maizegenetics.analysis.distance.IBSDistanceMatrix module
          • TASSELpy.net.maizegenetics.analysis.distance.Kinship module
          • Module contents
        • TASSELpy.net.maizegenetics.analysis.popgen package
          • Submodules
          • TASSELpy.net.maizegenetics.analysis.popgen.LDResult module
          • TASSELpy.net.maizegenetics.analysis.popgen.LinkageDisequilibrium module
          • Module contents
      • Module contents
    • TASSELpy.net.maizegenetics.dna package
      • Subpackages
        • TASSELpy.net.maizegenetics.dna.map package
          • Submodules
          • TASSELpy.net.maizegenetics.dna.map.Chromosome module
          • TASSELpy.net.maizegenetics.dna.map.Position module
          • TASSELpy.net.maizegenetics.dna.map.PositionList module
          • Module contents
        • TASSELpy.net.maizegenetics.dna.snp package
          • Subpackages
            • TASSELpy.net.maizegenetics.dna.snp.byte2d package
              • Submodules
              • TASSELpy.net.maizegenetics.dna.snp.byte2d.Byte2D module
              • Module contents
            • TASSELpy.net.maizegenetics.dna.snp.depth package
              • Submodules
              • TASSELpy.net.maizegenetics.dna.snp.depth.AlleleDepth module
              • Module contents
            • TASSELpy.net.maizegenetics.dna.snp.genotypecall package
              • Submodules
              • TASSELpy.net.maizegenetics.dna.snp.genotypecall.AbstractGenotypeCallTable module
              • TASSELpy.net.maizegenetics.dna.snp.genotypecall.ByteGenotypeCallTable module
              • TASSELpy.net.maizegenetics.dna.snp.genotypecall.GenotypeCallTable module
              • TASSELpy.net.maizegenetics.dna.snp.genotypecall.GenotypeMergeRule module
              • TASSELpy.net.maizegenetics.dna.snp.genotypecall.NucleotideGenotypeCallTable module
              • Module contents
            • TASSELpy.net.maizegenetics.dna.snp.score package
              • Submodules
              • TASSELpy.net.maizegenetics.dna.snp.score.AlleleProbability module
              • TASSELpy.net.maizegenetics.dna.snp.score.Dosage module
              • TASSELpy.net.maizegenetics.dna.snp.score.ReferenceProbability module
              • TASSELpy.net.maizegenetics.dna.snp.score.SiteScore module
              • Module contents
          • Submodules
          • TASSELpy.net.maizegenetics.dna.snp.CoreGenotypeTable module
          • TASSELpy.net.maizegenetics.dna.snp.FilterGenotypeTable module
          • TASSELpy.net.maizegenetics.dna.snp.GenotypeTable module
          • TASSELpy.net.maizegenetics.dna.snp.GenotypeTableBuilder module
          • TASSELpy.net.maizegenetics.dna.snp.GenotypeTableUtils module
          • TASSELpy.net.maizegenetics.dna.snp.ImportUtils module
          • Module contents
        • TASSELpy.net.maizegenetics.dna.tag package
          • Submodules
          • TASSELpy.net.maizegenetics.dna.tag.Tags module
          • Module contents
      • Submodules
      • TASSELpy.net.maizegenetics.dna.WHICH_ALLELE module
      • Module contents
    • TASSELpy.net.maizegenetics.matrixalgebra package
      • Subpackages
        • TASSELpy.net.maizegenetics.matrixalgebra.Matrix package
          • Submodules
          • TASSELpy.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrix module
          • TASSELpy.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrixFactory module
          • Module contents
        • TASSELpy.net.maizegenetics.matrixalgebra.decomposition package
          • Submodules
          • TASSELpy.net.maizegenetics.matrixalgebra.decomposition.EigenvalueDecomposition module
          • TASSELpy.net.maizegenetics.matrixalgebra.decomposition.SingularValueDecomposition module
          • Module contents
      • Module contents
    • TASSELpy.net.maizegenetics.plugindef package
      • Submodules
      • TASSELpy.net.maizegenetics.plugindef.AbstractPlugin module
      • TASSELpy.net.maizegenetics.plugindef.DataSet module
      • TASSELpy.net.maizegenetics.plugindef.Datum module
      • TASSELpy.net.maizegenetics.plugindef.Plugin module
      • TASSELpy.net.maizegenetics.plugindef.PluginParameter module
      • Module contents
    • TASSELpy.net.maizegenetics.stats package
      • Subpackages
        • TASSELpy.net.maizegenetics.stats.statistics package
          • Submodules
          • TASSELpy.net.maizegenetics.stats.statistics.FisherExact module
          • Module contents
      • Module contents
    • TASSELpy.net.maizegenetics.taxa package
      • Subpackages
        • TASSELpy.net.maizegenetics.taxa.distance package
          • Submodules
          • TASSELpy.net.maizegenetics.taxa.distance.DistanceMatrix module
          • TASSELpy.net.maizegenetics.taxa.distance.TaxaListMatrix module
          • Module contents
      • Submodules
      • TASSELpy.net.maizegenetics.taxa.TaxaList module
      • TASSELpy.net.maizegenetics.taxa.TaxaListBuilder module
      • TASSELpy.net.maizegenetics.taxa.Taxon module
      • Module contents
    • TASSELpy.net.maizegenetics.trait package
      • Submodules
      • TASSELpy.net.maizegenetics.trait.AbstractPhenotype module
      • TASSELpy.net.maizegenetics.trait.CombinePhenotype module
      • TASSELpy.net.maizegenetics.trait.FilterPhenotype module
      • TASSELpy.net.maizegenetics.trait.MarkerPhenotype module
      • TASSELpy.net.maizegenetics.trait.MarkerPhenotypeAdapter module
      • TASSELpy.net.maizegenetics.trait.Phenotype module
      • TASSELpy.net.maizegenetics.trait.ReadPhenotypeUtils module
      • TASSELpy.net.maizegenetics.trait.SimplePhenotype module
      • TASSELpy.net.maizegenetics.trait.Trait module
      • Module contents
    • TASSELpy.net.maizegenetics.util package
      • Submodules
      • TASSELpy.net.maizegenetics.util.BitSet module
      • TASSELpy.net.maizegenetics.util.GeneralAnnotation module
      • TASSELpy.net.maizegenetics.util.GeneralAnnotationStorage module
      • TASSELpy.net.maizegenetics.util.OpenBitSet module
      • TASSELpy.net.maizegenetics.util.ProgressListener module
      • TASSELpy.net.maizegenetics.util.TableReport module
      • TASSELpy.net.maizegenetics.util.UnmodifiableBitSet module
      • Module contents
  • Module contents

Module contents