TASSELpy.net.maizegenetics package

Subpackages

• TASSELpy.net.maizegenetics.analysis package
  • Subpackages
    • TASSELpy.net.maizegenetics.analysis.association package
      • Submodules
      • TASSELpy.net.maizegenetics.analysis.association.FixedEffectLMPlugin module
      • Module contents
    • TASSELpy.net.maizegenetics.analysis.data package
      • Submodules
      • TASSELpy.net.maizegenetics.analysis.data.IntersectionAlignmentPlugin module
      • TASSELpy.net.maizegenetics.analysis.data.UnionAlignmentPlugin module
      • Module contents
    • TASSELpy.net.maizegenetics.analysis.distance package
      • Submodules
      • TASSELpy.net.maizegenetics.analysis.distance.IBSDistanceMatrix module
      • TASSELpy.net.maizegenetics.analysis.distance.Kinship module
      • Module contents
    • TASSELpy.net.maizegenetics.analysis.popgen package
      • Submodules
      • TASSELpy.net.maizegenetics.analysis.popgen.LDResult module
      • TASSELpy.net.maizegenetics.analysis.popgen.LinkageDisequilibrium module
      • Module contents
  • Module contents
• TASSELpy.net.maizegenetics.dna package
  • Subpackages
    • TASSELpy.net.maizegenetics.dna.map package
      • Submodules
      • TASSELpy.net.maizegenetics.dna.map.Chromosome module
      • TASSELpy.net.maizegenetics.dna.map.Position module
      • TASSELpy.net.maizegenetics.dna.map.PositionList module
      • Module contents
    • TASSELpy.net.maizegenetics.dna.snp package
      • Subpackages
        • TASSELpy.net.maizegenetics.dna.snp.byte2d package
          • Submodules
          • TASSELpy.net.maizegenetics.dna.snp.byte2d.Byte2D module
          • Module contents
        • TASSELpy.net.maizegenetics.dna.snp.depth package
          • Submodules
          • TASSELpy.net.maizegenetics.dna.snp.depth.AlleleDepth module
          • Module contents
        • TASSELpy.net.maizegenetics.dna.snp.genotypecall package
          • Submodules
          • TASSELpy.net.maizegenetics.dna.snp.genotypecall.AbstractGenotypeCallTable module
          • TASSELpy.net.maizegenetics.dna.snp.genotypecall.ByteGenotypeCallTable module
          • TASSELpy.net.maizegenetics.dna.snp.genotypecall.GenotypeCallTable module
          • TASSELpy.net.maizegenetics.dna.snp.genotypecall.GenotypeMergeRule module
          • TASSELpy.net.maizegenetics.dna.snp.genotypecall.NucleotideGenotypeCallTable module
          • Module contents
        • TASSELpy.net.maizegenetics.dna.snp.score package
          • Submodules
          • TASSELpy.net.maizegenetics.dna.snp.score.AlleleProbability module
          • TASSELpy.net.maizegenetics.dna.snp.score.Dosage module
          • TASSELpy.net.maizegenetics.dna.snp.score.ReferenceProbability module
          • TASSELpy.net.maizegenetics.dna.snp.score.SiteScore module
          • Module contents
      • Submodules
      • TASSELpy.net.maizegenetics.dna.snp.CoreGenotypeTable module
      • TASSELpy.net.maizegenetics.dna.snp.FilterGenotypeTable module
      • TASSELpy.net.maizegenetics.dna.snp.GenotypeTable module
      • TASSELpy.net.maizegenetics.dna.snp.GenotypeTableBuilder module
      • TASSELpy.net.maizegenetics.dna.snp.GenotypeTableUtils module
      • TASSELpy.net.maizegenetics.dna.snp.ImportUtils module
      • Module contents
    • TASSELpy.net.maizegenetics.dna.tag package
      • Submodules
      • TASSELpy.net.maizegenetics.dna.tag.Tags module
      • Module contents
  • Submodules
  • TASSELpy.net.maizegenetics.dna.WHICH_ALLELE module
  • Module contents
• TASSELpy.net.maizegenetics.matrixalgebra package
  • Subpackages
    • TASSELpy.net.maizegenetics.matrixalgebra.Matrix package
      • Submodules
      • TASSELpy.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrix module
      • TASSELpy.net.maizegenetics.matrixalgebra.Matrix.DoubleMatrixFactory module
      • Module contents
    • TASSELpy.net.maizegenetics.matrixalgebra.decomposition package
      • Submodules
      • TASSELpy.net.maizegenetics.matrixalgebra.decomposition.EigenvalueDecomposition module
      • TASSELpy.net.maizegenetics.matrixalgebra.decomposition.SingularValueDecomposition module
      • Module contents
  • Module contents
• TASSELpy.net.maizegenetics.plugindef package
  • Submodules
  • TASSELpy.net.maizegenetics.plugindef.AbstractPlugin module
  • TASSELpy.net.maizegenetics.plugindef.DataSet module
  • TASSELpy.net.maizegenetics.plugindef.Datum module
  • TASSELpy.net.maizegenetics.plugindef.Plugin module
  • TASSELpy.net.maizegenetics.plugindef.PluginParameter module
  • Module contents
• TASSELpy.net.maizegenetics.stats package
  • Subpackages
    • TASSELpy.net.maizegenetics.stats.statistics package
      • Submodules
      • TASSELpy.net.maizegenetics.stats.statistics.FisherExact module
      • Module contents
  • Module contents
• TASSELpy.net.maizegenetics.taxa package
  • Subpackages
    • TASSELpy.net.maizegenetics.taxa.distance package
      • Submodules
      • TASSELpy.net.maizegenetics.taxa.distance.DistanceMatrix module
      • TASSELpy.net.maizegenetics.taxa.distance.TaxaListMatrix module
      • Module contents
  • Submodules
  • TASSELpy.net.maizegenetics.taxa.TaxaList module
  • TASSELpy.net.maizegenetics.taxa.TaxaListBuilder module
  • TASSELpy.net.maizegenetics.taxa.Taxon module
  • Module contents
• TASSELpy.net.maizegenetics.trait package
  • Submodules
  • TASSELpy.net.maizegenetics.trait.AbstractPhenotype module
  • TASSELpy.net.maizegenetics.trait.CombinePhenotype module
  • TASSELpy.net.maizegenetics.trait.FilterPhenotype module
  • TASSELpy.net.maizegenetics.trait.MarkerPhenotype module
  • TASSELpy.net.maizegenetics.trait.MarkerPhenotypeAdapter module
  • TASSELpy.net.maizegenetics.trait.Phenotype module
  • TASSELpy.net.maizegenetics.trait.ReadPhenotypeUtils module
  • TASSELpy.net.maizegenetics.trait.SimplePhenotype module
  • TASSELpy.net.maizegenetics.trait.Trait module
  • Module contents
• TASSELpy.net.maizegenetics.util package
  • Submodules
  • TASSELpy.net.maizegenetics.util.BitSet module
  • TASSELpy.net.maizegenetics.util.GeneralAnnotation module
  • TASSELpy.net.maizegenetics.util.GeneralAnnotationStorage module
  • TASSELpy.net.maizegenetics.util.OpenBitSet module
  • TASSELpy.net.maizegenetics.util.ProgressListener module
  • TASSELpy.net.maizegenetics.util.TableReport module
  • TASSELpy.net.maizegenetics.util.UnmodifiableBitSet module
  • Module contents

Module contents