Bases: TASSELpy.net.maizegenetics.dna.snp.score.SiteScore.SiteScore
Representation of allele probabilities
Methods
| castTo(pyType) | Casts this object to another java/python type |
| clone(*args) | Creates and returns a copy of this object |
| equals(*args) | Indicates whether some other object is “equal to” this one |
| getArray(size) | Gets an empty wrapped java array that can accept the type of the wrapped |
| getClass(*args) | Returns the runtime class of this Object. |
| getDblArray(rows[, cols]) | Gets an empty wrapped java array that can accept the type of other wrapped java arrays: i.e. |
| hasSiteScores(*args) | Returns true if this alignment has site scores |
| hashCode(*args) | Returns a hash code vlaue for the object |
| siteScore(*args) | Returns the site score of the given sequence and site |
| siteScoreType(*args) | Return what type of site scores this alignment has |
| siteScores(*args) | Returns the site scores |
| toString(*args) | Returns a string representation of the object |
| value(*args) | Gets the value of the probability at a site |
| wrap_existing_array(arr_instance) | Wraps a java array of this class’s type |
Bases: TASSELpy.net.maizegenetics.dna.snp.score.SiteScore.SiteScore
Methods
| castTo(pyType) | Casts this object to another java/python type |
| clone(*args) | Creates and returns a copy of this object |
| equals(*args) | Indicates whether some other object is “equal to” this one |
| getArray(size) | Gets an empty wrapped java array that can accept the type of the wrapped |
| getClass(*args) | Returns the runtime class of this Object. |
| getDblArray(rows[, cols]) | Gets an empty wrapped java array that can accept the type of other wrapped java arrays: i.e. |
| hasSiteScores(*args) | Returns true if this alignment has site scores |
| hashCode(*args) | Returns a hash code vlaue for the object |
| siteScore(*args) | Returns the site score of the given sequence and site |
| siteScoreType(*args) | Return what type of site scores this alignment has |
| siteScores(*args) | Returns the site scores |
| toString(*args) | Returns a string representation of the object |
| value(*args) | Gets the dosage value for a site/taxon |
| wrap_existing_array(arr_instance) | Wraps a java array of this class’s type |
Bases: TASSELpy.net.maizegenetics.dna.snp.score.SiteScore.SiteScore
ReferenceProbability
Methods
| castTo(pyType) | Casts this object to another java/python type |
| clone(*args) | Creates and returns a copy of this object |
| equals(*args) | Indicates whether some other object is “equal to” this one |
| getArray(size) | Gets an empty wrapped java array that can accept the type of the wrapped |
| getClass(*args) | Returns the runtime class of this Object. |
| getDblArray(rows[, cols]) | Gets an empty wrapped java array that can accept the type of other wrapped java arrays: i.e. |
| hasSiteScores(*args) | Returns true if this alignment has site scores |
| hashCode(*args) | Returns a hash code vlaue for the object |
| siteScore(*args) | Returns the site score of the given sequence and site |
| siteScoreType(*args) | Return what type of site scores this alignment has |
| siteScores(*args) | Returns the site scores |
| toString(*args) | Returns a string representation of the object |
| value(*args) | Gets the value of the Reference probability for a given site and taxon |
| wrap_existing_array(arr_instance) | Wraps a java array of this class’s type |
Bases: TASSELpy.java.lang.Object.Object
SiteScore
Methods
| castTo(pyType) | Casts this object to another java/python type |
| clone(*args) | Creates and returns a copy of this object |
| equals(*args) | Indicates whether some other object is “equal to” this one |
| getArray(size) | Gets an empty wrapped java array that can accept the type of the wrapped |
| getClass(*args) | Returns the runtime class of this Object. |
| getDblArray(rows[, cols]) | Gets an empty wrapped java array that can accept the type of other wrapped java arrays: i.e. |
| hasSiteScores(*args) | Returns true if this alignment has site scores |
| hashCode(*args) | Returns a hash code vlaue for the object |
| siteScore(*args) | Returns the site score of the given sequence and site |
| siteScoreType(*args) | Return what type of site scores this alignment has |
| siteScores(*args) | Returns the site scores |
| toString(*args) | Returns a string representation of the object |
| wrap_existing_array(arr_instance) | Wraps a java array of this class’s type |
Returns true if this alignment has site scores
| Signature: | hasSiteScores () |
|---|---|
| Returns: | true if this alignment has site scores |
| Return type: | boolean |
Returns the site score of the given sequence and site
| Signature: | siteScore (int taxon, int site) |
|---|---|
| Parameters: |
|
| Returns: | site score |
| Return type: | float |