neurom.view.plot_soma

neurom.view.plot_soma(ax, soma, plane='xy', soma_outline=True, linewidth=1.2, color=None, alpha=0.8)

Generates a 2d figure of the soma.

Parameters:

• ax (matplotlib axes) – on what to plot
• soma (neurom.core.Soma) – plotted soma
• plane (str) – Any pair of ‘xyz’
• diameter_scale (float) – Scale factor multiplied with segment diameters before plotting
• linewidth (float) – all segments are plotted with this width, but only if diameter_scale=None
• color (str or None) – Color of plotted values, None corresponds to default choice
• alpha (float) – Transparency of plotted values