neurom.core._neuron.iter_sections¶
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neurom.core._neuron.
iter_sections
(neurites, iterator_type=<unbound method Tree.ipreorder>, neurite_filter=None)[source]¶ Iterator to the sections in a neurite, neuron or neuron population.
Parameters: - neurites – neuron, population, neurite, or iterable containing neurite objects
- iterator_type – type of the iteration (ipreorder, iupstream, ibifurcation_point)
- neurite_filter – optional top level filter on properties of neurite neurite objects.
Examples
Get the number of points in each section of all the axons in a neuron population
>>> import neurom as nm >>> from neurom.core import ites_sections >>> filter = lambda n : n.type == nm.AXON >>> n_points = [len(s.points) for s in iter_sections(pop, neurite_filter=filter)]