caps.quality_control.brainvisa_map_cluster_analysis.MapClusterAnalysis¶
MapClusterAnalysis¶
- class caps.quality_control.brainvisa_map_cluster_analysis.MapClusterAnalysis(autoexport_nodes_parameters=True, **kwargs)[source]¶
Visulaize a weight map
Steps are: * Extract and Mesh Clusters in a standard space * Register the reference to the target image and aplly the affine transformation to the map image. * Vizualization of signed stattistic map or weigths
Inputs¶
[Mandatory]
map_image: a file name (mandatory)
input file
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moving_image: a file name (mandatory)
input file
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reference_image: a file name (mandatory)
reference file
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thresh_neg_bound: any value (mandatory)
Negative bound threshold (lower, upper)
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thresh_pos_bound: any value (mandatory)
Positivee bound threshold (lower, upper)
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thresh_size: an integer (mandatory)
Threshold, in voxels nb, between small and big clusters
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white_mesh_file: a file name (mandatory)
a mesh file of the underlying neuroanatomy
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[Optional]
Outputs¶
cluster_file: a file name
Cluster file
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cluster_mask_file: a file name
Cluster mask file
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connected_components: a file name
Connected components
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mesh_file: a file name
Mesh file
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register_map_image: a file name
path/name of registered file (if generated)
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register_ref_image: a file name
path/name of registered file (if generated)
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Pipeline schema¶
