caps.functional_connectivity.temporal_preproc.TemporalPreproc

TemporalPreproc

class caps.functional_connectivity.temporal_preproc.TemporalPreproc

Temporal fMRI preproc with CONN

Inputs

[Mandatory]

[Optional]

confounds_deriv: a legal value (optional) number of derivatives for each dimension [0]

confounds_dimensions: a legal value (optional) number of confound dimensions [defaults to using all dimensions available for each confound variable]

confounds_names: a legal value (optional) confounds names can be: ‘Grey Matter’, ‘White Matter’, ‘CSF’,any ROI name, any covariate name, or ‘Effect of *’ where * represents any condition name. Default to ‘White Matter’,’CSF’ and all covariates names

despiking: an integer (optional) 1/0: temporal despiking with a hyperbolic tangent squashing function [1]

detrending: an integer (optional) 1/0: BOLD times-series detrending [1]

done: an integer (optional) 1/0, [0]. 0: only edits project fields (do not run Preproc->’Done’); 1: run Preproc->’Done’

filter: a legal value (optional) frequency filter (band-pass values, in Hz) [0.008,0.09]

overwrite: a legal value (optional) overwrite existing results if they exist [‘Yes’]

Outputs

conn_batch: a legal value the generated conn batch