caps.diffusion_preproc.motion_correction.TimeSerieMotionCorrection¶
TimeSerieMotionCorrection¶
- class caps.diffusion_preproc.motion_correction.TimeSerieMotionCorrection[source]¶
FSL rigid registration of a time serie sequence to a reference volume
Note
This script rotates the b-vectors, so ensure the consistency between the resulting nifti orientation and the b matrix table.
For complete details on the registration algorithm, see the FLIRT Documentation.
Inputs¶
[Mandatory]
bvecs: a file name (mandatory)
the diffusion b-vectors
|
in_files: a legal value (mandatory)
a serie of images to registered
|
reference_file: a file name (mandatory)
the reference image
|
[Optional]
output_directory: a directory name (optional)
the output directory
|
Outputs¶
motion_corrected_files: a legal value
path of the registered images
|
reoriented_bvecs: a file name
the reoriented diffusion b-vectors
|
rigid_transformations: a legal value
path of the calculated rigid transformations
|