caps.diffusion_preproc.bet.dBET¶
dBET¶
- class caps.diffusion_preproc.bet.dBET(autoexport_nodes_parameters=True, **kwargs)[source]¶
Diffusion FSL Brain Extraction Tool (BET). Deletes non-brain tissue from a b0 image.
For complete details, see the BET Documentation.
This pipeline include four processing steps:
Inputs¶
[Mandatory]
bet_threshold: a float (mandatory)
fractional intensity threshold
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bvals: a file name (mandatory)
the the diffusion b-values
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dw_image: a file name (mandatory)
an existing diffusion weighted image
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generate_binary_mask: a boolean (mandatory)
create binary mask image
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generate_mesh: a boolean (mandatory)
generate a vtk mesh brain surface
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generate_skull: a boolean (mandatory)
create skull image
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use_4d_input: a boolean (mandatory)
apply to 4D fMRI data
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[Optional]
specified_index_of_ref_image: an integer (optional)
index of the reference b=0 volume
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Outputs¶
bet_inskull_mask_file: a file name
path/name of inskull mask (if generated)
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bet_inskull_mesh_file: a file name
path/name of inskull mesh outline (if generated)
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bet_mask_file: a file name
path/name of binary brain mask (if generated)
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bet_meshfile: a file name
path/name of vtk mesh file (if generated)
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bet_out_file: a file name
path/name of skullstripped file (if generated)
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bet_outskin_mask_file: a file name
path/name of outskin mask (if generated)
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bet_outskin_mesh_file: a file name
path/name of outskin mesh outline (if generated)
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bet_outskull_mask_file: a file name
path/name of outskull mask (if generated)
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bet_outskull_mesh_file: a file name
path/name of outskull mesh outline (if generated)
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bet_skull_mask_file: a file name
path/name of skull mask (if generated)
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index_of_ref_image: an integer
index of the reference b=0 volume
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outelements: a legal value
list of selected values
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ref_image: any value
selected value
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splited_images: a legal value or a file name
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Pipeline schema¶
