RTOOLS documentation¶
rtools is a python package that provides utilities related to the R language. It is mostly built upon RPY2. It is attended to simplify life of developers who are using R packages from python.
- rtools is used by:
- cellnopt.wrapper to provide python interface to cellnopt R packages
- pymeigo, a python interface to MEIGOR, an optimisation toolbox written in R.
Installation¶
rtools is available on PyPi. The following command should install rtools and its dependencies automatically:
pip install rtools
Note
How to Install pip
User guide¶
- 1. Quick Start
- 1.1. Running R code
- 1.2. Install a R package from bioconductor
- 1.3. Install a local R package (tar.gz) or from a URL
- 1.4. Use the RPackageManager
- 1.5. Build a matplotlib colormap similar to a R colormap
- 1.6. Wrapper around a S4 class
- 1.7. Loading a R package
- 1.8. Calling R plot and saving results in a file