3. NoteBooks

ipython notebook can be downloaded from this section. You can either see the results via nbviewer, or download and run them yourself. To do so, download the notebook and open a shell where is saved the file. Type:

ipython notebook

You should see the notebook name. Click on it and you are ready to try. Cells can be executed by typing CTRL+enter

1. Reading Mass Spec data (YEAST case).ipynb: download here
2. Alignment (yeast case).ipynb download here
3. Replicates.ipynb download here
4. Clustering (YEAST case).ipynb download here
5. Annotations.ipynb download here
6. YEAST analysis.ipynb download here
7. YEAST oxidation.ipynb download here
8. correlation and PCA.ipynb download here
9. Playing with psites.ipynb download here