The fcm flow cytometry analysis library

fcm is a Python library to perform exploratory data analysis and batch processing for flow cytometry data. It provides methods for doing loading fcs data and performing spectral compensation and standard log, and loglike transformations. It supports traditional flow analysis using gating (standard polygon, quadrant, threshold and interval gates) and model based analysis (k-means and Dirichlet processes mixture models).

example heat map

Indices and tables