.. fcm documentation master file, created by sphinx-quickstart on Wed Dec 14 10:10:45 2011. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. The *fcm* flow cytometry analysis library ######################################### :py:mod:`fcm` is a Python library to perform exploratory data analysis and batch processing for flow cytometry data. It provides methods for doing loading fcs data and performing spectral compensation and standard log, and loglike transformations. It supports traditional flow analysis using gating (standard polygon, quadrant, threshold and interval gates) and model based analysis (k-means and Dirichlet processes mixture models). .. figure:: heatmap.png :align: center :height: 400px :alt: example heat map :figclass: align-center .. toctree:: :maxdepth: 2 :hidden: Home install basic advanced gallery data documentation video Indices and tables ################## * :ref:`genindex` * :ref:`modindex` * :ref:`search`