Index

A

add_view() (fcm.FCMdata method) Annotation (class in fcm)

average() (fcm.statistics.DPMixture method)

B

BadFCMPointDataTypeError bilinear_interpolate() (in module fcm.graphics)

boundary_events() (fcm.FCMdata method)

C

centroids() (fcm.statistics.KMeans method) channels (fcm.FCMdata attribute) check_names() (fcm.FCMcollection method) classify() (fcm.FCMcollection method) (fcm.statistics.DPMixture method) (fcm.statistics.KMeans method) (fcm.statistics.ModalDPMixture method) compensate() (fcm.FCMcollection method) (fcm.FCMdata method)

CompensationError contour() (in module fcm.graphics) copy() (fcm.Annotation method) (fcm.FCMdata method) current_node (fcm.FCMdata attribute)

D

Dime (class in fcm.statistics) DPCluster (class in fcm.statistics) DPMixture (class in fcm.statistics)

DPMixtureModel (class in fcm.statistics) draw() (fcm.statistics.DPCluster method) (fcm.statistics.DPMixture method) drop() (fcm.statistics.Dime method)

E

export() (fcm.FCMdata method)

F

fcm (module) fcm.graphics (module) fcm.statistics (module) FCMcollection (class in fcm) FCMdata (class in fcm)

FCSreader (class in fcm) file_names (fcm.FlowjoWorkspace attribute) fit() (fcm.FCMcollection method) (fcm.statistics.DPMixtureModel method) (fcm.statistics.HDPMixtureModel method) (fcm.statistics.KMeansModel method) fix_lmd() (fcm.FCSreader method) FlowjoWorkspace (class in fcm)

G

gate() (fcm.FCMcollection method) (fcm.FCMdata method) (fcm.IntervalGate method) (fcm.PolyGate method) (fcm.QuadGate method) (fcm.ThresholdGate method) gates (fcm.FlowjoWorkspace attribute) generate_f_score_gate() (in module fcm) get_channel_by_name() (fcm.FCMdata method) get_class() (fcm.statistics.DPMixtureModel method)

get_cur_node() (fcm.FCMdata method) get_FCMdata() (fcm.FCSreader method) get_markers() (fcm.FCMdata method) get_results() (fcm.statistics.DPMixtureModel method) (fcm.statistics.HDPMixtureModel method) (fcm.statistics.KMeansModel method) get_spill() (fcm.FCMdata method)

H

HDPMixtureModel (class in fcm.statistics) hist() (in module fcm.graphics)

hyperlog() (fcm.FCMdata method) (in module fcm)

I

IntervalGate (class in fcm)

K

keys() (fcm.FCMcollection method) KMeans (class in fcm.statistics)

KMeansModel (class in fcm.statistics)

L

last() (fcm.statistics.DPMixture method) load_compensate_matrix() (in module fcm) load_flowjo_xml() (in module fcm) load_mu() (fcm.statistics.DPMixtureModel method) load_pi() (fcm.statistics.DPMixtureModel method) load_ref() (fcm.statistics.DPMixtureModel method)

load_sigma() (fcm.statistics.DPMixtureModel method) loadFCS() (in module fcm) loadMultipleFCS() (in module fcm) log() (fcm.FCMcollection method) (fcm.FCMdata method) log_likelihood() (fcm.statistics.DPMixture method) logicle() (fcm.FCMcollection method) (fcm.FCMdata method) (fcm.FlowjoWorkspace method) (in module fcm)

M

make_modal() (fcm.statistics.DPMixture method) mixnormpdf() (in module fcm.statistics) mixnormrnd() (in module fcm.statistics) ModalDPMixture (class in fcm.statistics)

modes() (fcm.statistics.ModalDPMixture method) mus() (fcm.statistics.DPMixture method) (fcm.statistics.KMeans method) mvnormpdf() (in module fcm.statistics)

N

name_to_index() (fcm.FCMdata method)

P

pair_plot() (in module fcm.graphics) parse_analysis() (fcm.FCSreader method) parse_ascii_data() (fcm.FCSreader method) parse_data() (fcm.FCSreader method) parse_float_data() (fcm.FCSreader method) parse_header() (fcm.FCSreader method) parse_int_data() (fcm.FCSreader method) parse_text() (fcm.FCSreader method)

pis() (fcm.statistics.DPMixture method) plot_gate() (in module fcm.graphics) PolyGate (class in fcm) pprint() (fcm.FlowjoWorkspace method) prob() (fcm.statistics.DPCluster method) (fcm.statistics.DPMixture method) (fcm.statistics.ModalDPMixture method) pseudocolor() (in module fcm.graphics) pseudocolors() (in module fcm.graphics)

Q

QuadGate (class in fcm)

R

read_bytes() (fcm.FCSreader method)

S

set_logicle() (in module fcm.graphics) sigmas() (fcm.statistics.DPMixture method) step() (fcm.statistics.DPMixtureModel method)

subsample() (fcm.FCMdata method) summary() (fcm.FCMcollection method) (fcm.FCMdata method)

T

ThresholdGate (class in fcm) to_list() (fcm.FCMcollection method)

trilinear_interpolate() (in module fcm.graphics)

U

UnimplementedFcsDataMode

V

view() (fcm.FCMdata method)

visit() (fcm.FCMdata method)