neurom.core.make_soma

neurom.core.make_soma(points, soma_check=None, soma_class='contour')

Make a soma object from a set of points

Infers the soma type (SomaSinglePoint, SomaSimpleContour) from the points and the ‘soma_class’

Parameters:

• points – collection of points forming a soma.
• soma_check – optional validation function applied to points. Should
• a SomaError if points not valid. (raise) –
• soma_class (str) – one of ‘contour’ or ‘cylinder’ to specify the type

Raises:

• SomaError if no soma points found, points incompatible with soma, or
• if soma_check(points) fails.