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TutorialΒΆ

  • Getting started
    • Hi-C data format
    • Find Topologically Associating Domains
    • Data visualization
    • Saving and restoring data
  • Alignment of TAD boundaries
    • Aligning boundaries
    • Alignment objects
  • TAD clustering
    • Compare two TADs
  • Three-dimensional modeling
    • Data filtering
    • Data normalization
    • TADBit tutorial #1. From Hi-C data to TAD 3D models

Table Of Contents

  • Introduction
  • Installing TADBit on GNU/Linux
  • Tutorial
    • Getting started
    • Alignment of TAD boundaries
    • TAD clustering
    • Three-dimensional modeling
  • Reference Guide
  • Bibliography

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