Introduction What is Tadbit? Why? Installing TADBit on GNU/Linux Dependencies Python libraries IMP - 3D modeling MCL - clustering Chimera - visualization LiftOver TADBit Tutorial Getting started Hi-C data format Find Topologically Associating Domains Data visualization Saving and restoring data Alignment of TAD boundaries Aligning boundaries Alignment objects TAD clustering Compare two TADs Three-dimensional modeling Data filtering Data normalization TADBit tutorial #1. From Hi-C data to TAD 3D models Reference Guide Chromosome class Load chromosome ExperimentList class Experiment class Tadbit functions TAD clustering Parsers Boundary Aligner Alignment class Generate a 3D models IMPmodel class IMPoptimizer class StructuralModels class Utilities Bibliography
Introduction
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