Examples

Here is a list of examples of use of the MetagenomeDB api (see API Documentation) to perform various tasks. Code is provided so that you can replicate those examples with your own data.

Creating a graph of collections

How to generate a graph (viewable with Cytoscape) with collections and their sub- or super-collections.

Creating a graph of contigs sharing reads

How to generate a graph (viewable with Cytoscape) with contigs sharing reads.

Querying BLAST results

How to retrieve best hits of sequences from previously imported BLAST outputs.