pychemia.runner package

Classes to manipulate execution on Queue systems, ‘Torque’

Submodules

pychemia.runner.pbs module

class pychemia.runner.pbs.PBSRunner(workdir, filename='batch.pbs')

Bases: object

initialize(nodes=1, ppn=2, walltime=None, message='ae', mail=None, queue=None)

set_template(template)

set_walltime(walltime)

submit(priority=0)

write_pbs()

pychemia.runner.pbs.get_jobs(user)

pychemia.runner.pbs.report_cover()

pychemia.runner.runner module

class pychemia.runner.runner.Runner(code, code_bin, environment, use_mpi=True, nmpiproc=2, nconcurrent=1, runtime=3600)

Bases: object

initialize(dirpath)

Utility that copy a given script and execute the given command inside the directory

Parameters:dirpath – (str) Directory to execute runner

run(dirpath='.', analyser=None)

run_multidirs(workdirs, worker, checker)

run_multidirs_nonstop(workdirs, worker, checker)