Omics Pipe Available Pipelines¶

RNA-seq (Tuxedo)¶

RNA-seq(Anders 2013)¶

Whole Exome Sequencing (GATK)¶

Whole Genome Sequencing (GATK)¶

Whole Genome Sequencing (MUTECT)¶

ChIP-seq (MACS)¶

ChIP-seq (HOMER)¶

Breast Cancer Personalized Genomics Report- RNAseq¶

TCGA Reanalysis Pipeline - RNAseq¶

TCGA Reanalysis Pipeline - RNAseq Counts¶

miRNAseq Counts (Anders 2013)¶

miRNAseq (Tuxedo)¶

All Available Modules¶