TCGA Reanalysis Pipeline - RNAseq¶

Modules included in the TCGA RNAseq Cancer pipeline.

TCGA Download¶

FASTQC¶

STAR Aligner¶

HTSEQ-count¶

RSEQC¶

Fusion Catcher¶

BWA/SNPiR¶

BWA¶

SNPiR¶

Filter Variants¶

Intogen¶

OncoRep Cancer Report¶