Running the examplesΒΆ

The examples use the IPython Notebook to provide narrative descriptions along with executable code.

See IPython Notebook Tutorials to learn more about using the IPython Notebook.

  1. Install metaseq and dependencies (see Installation)

  2. Make sure you are using the environment where metaseq is installed

  3. Make sure you have the IPython Notebook:

    pip install ipython[all]
    
  4. Download each example notebook as a file (right-click, save as):

  5. In the directory where you saved the notebooks, run:

    ipython notebook
    

A browser window should pop up, and you can click on the example notebooks. See the IPython Notebook page for more information about the IPython Notebook in general.

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Example 1: Average ChIP-seq signal over promoters

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