Changelog

Changes in v0.5.5.1

• change DifferentialExpressionResults.scatter default plotting style to have linewidths > 0. Previously, using linewidths=0 cause plots to show up blank in IPython Notebook on Mac

Changes in v0.5.5

• add metaseq.tableprinter module

Changes in v0.5.4

• metaseq.results_table.DESeq2Results class
• handle cases where callbacks could be called multiple times
• support marginal histograms of length-1 arrays
• metaseq.persistence functions use absolute path for features to make symlinking more robust
• differential expression classes cleaned up and refactored
• new kwargs for metaseq.plotutils.imshow: figure_kwargs, subset_by, subset_order
• new metaseq.plotutils.add_labels_to_subsets helper function

Changes in v0.5

v0.5 marks a major improvement and maturation of metaseq but at the expense of backward-compatibility. The changes are too numerous to list, but include massive plotting improvements, speedups, more flexible API, and much more.