Bases: metaseq.minibrowser.SignalMiniBrowser
Mini-browser to show a signal panel on top and gene models on the bottom.
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Methods
| close_all() | Close all figures spawned by this class. |
| example_panel(ax, feature) | A example panel that just prints the text of the feature. |
| gene_panel(ax, feature) | Plots gene models on an Axes. |
| make_fig() | Figure constructor, called before self.plot() |
| panels() | Add 2 panels to the figure, top for signal and bottom for gene models |
| plot(feature) | Spawns a new figure showing data for feature. |
| signal_panel(ax, feature) | Plots each genomic signal as a line using the corresponding |
Methods
| __init__(genomic_signal_objs, db, **kwargs) | Mini-browser to show a signal panel on top and gene models on the bottom. |
| close_all() | Close all figures spawned by this class. |
| example_panel(ax, feature) | A example panel that just prints the text of the feature. |
| gene_panel(ax, feature) | Plots gene models on an Axes. |
| make_fig() | Figure constructor, called before self.plot() |
| panels() | Add 2 panels to the figure, top for signal and bottom for gene models |
| plot(feature) | Spawns a new figure showing data for feature. |
| signal_panel(ax, feature) | Plots each genomic signal as a line using the corresponding |
Mini-browser to show a signal panel on top and gene models on the bottom.
| Parameters: |
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Close all figures spawned by this class.
A example panel that just prints the text of the feature.
Plots gene models on an Axes.
Queries the database
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Figure constructor, called before self.plot()
Spawns a new figure showing data for feature.
| Parameters: | feature – A pybedtools.Interval object |
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Using the pybedtools.Interval feature, creates figure specified in BaseMiniBrowser.make_fig() and plots data on panels according to self.panels().
Plots each genomic signal as a line using the corresponding plotting_kwargs