Navigation

  • index
  • modules |
  • next |
  • previous |
  • OBITools 1.01 22 documentation »
  • OBITools scripts »

Computations on sequencesΒΆ

  • illuminapairedend: aligns paired-end Illumina reads
    • illuminapairedend specific options
    • Options to specify input format
    • Options to specify output format
    • Common options
    • illuminapairedend added sequence attributes
  • ngsfilter : Assigns sequence records to the corresponding experiment/sample based on DNA tags and primers
    • ngsfilter specific options
    • Options to specify input format
    • Options to specify output format
    • Common options
    • ngsfilter added sequence attributes
  • obicomplement: reverse-complements sequences
    • Options to specify input format
    • Common options
  • obiclean: tags a set of sequences for PCR/sequencing errors identification
    • obiclean specific options
    • Options to specify input format
    • Options to specify output format
    • Common options
    • obiclean used sequence attributes
    • obiclean added sequence attributes
  • obicut: trims sequences
    • obicut specific options
    • Sequence record selection options
    • Taxonomy related options
    • Common options
  • obijoinpairedend: Joins paired-end reads
    • obijoinpairedend specific options
    • Options to specify input format
    • Options to specify output format
    • Common options
  • obiuniq: groups and dereplicates sequences
    • obiuniq and taxonomic information
    • obiuniq specific options
    • Taxonomy related options
    • Options to specify input format
    • Common options
    • obiuniq added sequence attributes
    • obiuniq used sequence attribute

Previous topic

obiaddtaxids: adds taxids to sequence records using an ecopcr database

Next topic

illuminapairedend: aligns paired-end Illumina reads

This Page

  • Show Source

Quick search

Enter search terms or a module, class or function name.

Navigation

  • index
  • modules |
  • next |
  • previous |
  • OBITools 1.01 22 documentation »
  • OBITools scripts »
© Copyright 2009 - 2015, OBITool Development Team. Created using Sphinx 1.3.1.