Computations on sequences

• illuminapairedend: aligns paired-end Illumina reads
  • illuminapairedend specific options
  • Options to specify input format
  • Options to specify output format
  • Common options
  • illuminapairedend added sequence attributes
• ngsfilter : Assigns sequence records to the corresponding experiment/sample based on DNA tags and primers
  • ngsfilter specific options
  • Options to specify input format
  • Options to specify output format
  • Common options
  • ngsfilter added sequence attributes
• obicomplement: reverse-complements sequences
  • Options to specify input format
  • Common options
• obiclean: tags a set of sequences for PCR/sequencing errors identification
  • obiclean specific options
  • Options to specify input format
  • Options to specify output format
  • Common options
  • obiclean used sequence attributes
  • obiclean added sequence attributes
• obicut: trims sequences
  • obicut specific options
  • Sequence record selection options
  • Taxonomy related options
  • Common options
• obijoinpairedend: Joins paired-end reads
  • obijoinpairedend specific options
  • Options to specify input format
  • Options to specify output format
  • Common options
• obiuniq: groups and dereplicates sequences
  • obiuniq and taxonomic information
  • obiuniq specific options
  • Taxonomy related options
  • Options to specify input format
  • Common options
  • obiuniq added sequence attributes
  • obiuniq used sequence attribute