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Sequence sampling and filteringΒΆ

  • obiextract: extract samples from a dataset
    • obiextract specific options
    • Options to specify input format
    • Options to specify output format
    • Common options
    • obiextract modified sequence attributes
    • obiextract used sequence attribute
  • obigrep: filters sequence file
    • Sequence record selection options
    • Taxonomy related options
    • Options to specify input format
    • Options to specify output format
    • Common options
  • obihead: extracts the first sequence records
    • obihead specific options
    • Options to specify input format
    • Common options
  • obisample: randomly resamples sequence records
    • obisample specific options
    • Options to specify input format
    • Common options
    • obisample used sequence attribute
  • obiselect : selects representative sequence records
    • obiselect specific options
    • Options to specify input format
    • Taxonomy related options
    • Options to specify output format
    • Common options
    • obiselect added sequence attributes
    • obiselect used sequence attribute
  • obisplit: Splits a sequence file in a set of subfiles
    • obisplit specific options
    • Options to specify input format
    • Common options
  • obisubset: extract a subset of samples
    • obisubset specific options
    • Options to specify input format
    • Options to specify output format
    • Common options
    • obisubset modifies sequence attributes
    • obisubset used sequence attribute
  • obitail: extracts the last sequence records
    • obitail specific options
    • Options to specify input format
    • Common options

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obiuniq: groups and dereplicates sequences

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