Index

A

append_to_path() (in module seqan.test) assert_eq() (in module seqan.test.test_simple_types)

assert_ne() (in module seqan.test.test_simple_types)

B

build environment

Builder (class in seqan.io.graphtool)

C

check_comparisons() (in module seqan.test.test_strings) check_comparisons_both_ways() (in module seqan.test.test_strings) check_g() (in module seqan.test.test_simple_types) check_go_down_str() (in module seqan.test.test_iterator)

check_n() (in module seqan.test.test_simple_types) check_strs_eq() (in module seqan.test.test_strings) check_strs_ne() (in module seqan.test.test_strings) color_edges_by_first_symbol() (in module seqan.io.graphtool)

D

dash_non_suffix_edges() (in module seqan.io.graphtool) depthfirsttraversal() (in module seqan.traverse) depthpredicate() (in module seqan.traverse) descend() (seqan.test.test_iterator.DescenderTest method)

DescenderTest (class in seqan.test.test_iterator) descendhistory() (seqan.test.test_iterator.DescenderTest method) download

E

edge_labels_for_output() (in module seqan.io.graphtool)

edges_in_suffix() (in module seqan.io.graphtool)

F

fasta_dir() (in module seqan.test) fasta_file() (in module seqan.test)

findsuffixes() (in module seqan)

G

get_vertex() (seqan.io.graphtool.Builder method)

I

indexiteratorcombos() (in module seqan.test.test_iterator) infix_maker() (in module seqan.test.test_strings) init_env() (in module seqan.test)

installation is_debug_python() (in module seqan.test) iteratortypesforindex() (in module seqan.test.test_iterator)

L

log_path() (in module seqan.test)

M

make_string_set() (in module seqan.test.test_iterator)

map_vertices() (seqan.io.graphtool.Builder method)

P

prepend_to_path() (in module seqan.test) prerequisites

property_map_for() (in module seqan)

R

root_vertex_property() (in module seqan.io.graphtool)

S

seqan (module) seqan.io (module) seqan.io.graphtool (module) seqan.io.pgf (module) seqan.test (module) seqan.test.test_build_index (module) seqan.test.test_graphtool (module) seqan.test.test_index (module) seqan.test.test_iterator (module)

seqan.test.test_property_map (module) seqan.test.test_read_fasta (module) seqan.test.test_simple_types (module) seqan.test.test_small_index (module) seqan.test.test_strings (module) seqan.test.test_write_pgf (module) seqan.traverse (module) show_shallow_tree() (in module seqan.test) suffixpredicate() (in module seqan.traverse)

T

test_build_index() (in module seqan.test.test_build_index) (in module seqan.test.test_index) test_by_value_init() (in module seqan.test.test_iterator) test_compare_history_and_non_history() (in module seqan.test.test_iterator) test_dna_against_dna5() (in module seqan.test.test_simple_types) test_g() (in module seqan.test.test_simple_types) test_get_occurrences() (in module seqan.test.test_iterator) test_go_down() (in module seqan.test.test_index) test_go_down_str() (in module seqan.test.test_iterator) test_go_up() (in module seqan.test.test_iterator) test_graphtool() (in module seqan.test.test_graphtool) test_index_as_strings_custodian() (in module seqan.test.test_index) test_index_text() (in module seqan.test.test_index) test_infix_comparison() (in module seqan.test.test_index) test_iterator() (in module seqan.test.test_iterator) test_long_edges() (in module seqan.test.test_index) test_long_simple_type() (in module seqan.test.test_simple_types) test_n() (in module seqan.test.test_simple_types)

test_parallel_descender() (in module seqan.test.test_iterator) test_property_map() (in module seqan.test.test_property_map) test_read_fasta() (in module seqan.test.test_read_fasta) test_representative_equality() (in module seqan.test.test_iterator) test_save_load_index() (in module seqan.test.test_index) test_small_index() (in module seqan.test.test_index) test_string_comparison() (in module seqan.test.test_strings) test_string_infix_types_different() (in module seqan.test.test_strings) test_string_infixes() (in module seqan.test.test_strings) test_string_reversecomplement() (in module seqan.test.test_strings) test_string_set_append() (in module seqan.test.test_strings) test_string_set_iteration() (in module seqan.test.test_strings) test_strings() (in module seqan.test.test_strings) test_write_pgf() (in module seqan.test.test_write_pgf) topdowncopytraversal() (in module seqan.traverse) topdownhistorytraversal() (in module seqan.traverse) topdownparalleltraversal() (in module seqan.traverse)

U

update_path_for_seqan() (in module seqan.test)

V

version_string() (in module seqan)

visitvertex() (in module seqan.test.test_build_index) (seqan.io.graphtool.Builder method)

W

write_pgf() (in module seqan.io.pgf)