seqan.test package
Submodules
seqan.test.test_build_index module
Test building an index.
-
seqan.test.test_build_index.test_build_index()
-
seqan.test.test_build_index.visitvertex(it)
seqan.test.test_index module
Test building an index.
-
seqan.test.test_index.test_build_index()
-
seqan.test.test_index.test_go_down()
-
seqan.test.test_index.test_index_as_strings_custodian()
-
seqan.test.test_index.test_index_text()
-
seqan.test.test_index.test_infix_comparison()
-
seqan.test.test_index.test_long_edges()
-
seqan.test.test_index.test_save_load_index()
-
seqan.test.test_index.test_small_index()
seqan.test.test_iterator module
Test assigning iterator functionality.
-
class seqan.test.test_iterator.DescenderTest
Bases: object
-
descend(it)
Descend the index.
-
descendhistory(it)
Descend the index.
-
seqan.test.test_iterator.check_go_down_str(i, s, representative)
-
seqan.test.test_iterator.indexiteratorcombos()
-
seqan.test.test_iterator.iteratortypesforindex(Index)
-
seqan.test.test_iterator.make_string_set(seqs)
Make a string set of the given type from the python sequences.
-
seqan.test.test_iterator.test_by_value_init()
Test by-value initialisation
-
seqan.test.test_iterator.test_compare_history_and_non_history()
-
seqan.test.test_iterator.test_get_occurrences()
Test getting iterator occurrences
-
seqan.test.test_iterator.test_go_down_str()
-
seqan.test.test_iterator.test_go_up()
-
seqan.test.test_iterator.test_iterator()
-
seqan.test.test_iterator.test_parallel_descender()
-
seqan.test.test_iterator.test_representative_equality()
seqan.test.test_property_map module
Test assigning properties to nodes.
-
seqan.test.test_property_map.test_property_map()
seqan.test.test_read_fasta module
Test reading a FASTA file.
-
seqan.test.test_read_fasta.test_read_fasta()
seqan.test.test_simple_types module
Test simple type functionality.
-
seqan.test.test_simple_types.assert_eq(x1, x2)
-
seqan.test.test_simple_types.assert_ne(x1, x2)
-
seqan.test.test_simple_types.check_g(x)
-
seqan.test.test_simple_types.check_n(x)
-
seqan.test.test_simple_types.test_dna_against_dna5()
-
seqan.test.test_simple_types.test_g()
-
seqan.test.test_simple_types.test_long_simple_type()
-
seqan.test.test_simple_types.test_n()
seqan.test.test_small_index module
Test some memory management problems
seqan.test.test_strings module
Test string functionality.
-
seqan.test.test_strings.check_comparisons(str_type_1, str_type_2)
-
seqan.test.test_strings.check_comparisons_both_ways(str_type_1, str_type_2)
-
seqan.test.test_strings.check_strs_eq(s1, s2)
-
seqan.test.test_strings.check_strs_ne(s1, s2)
-
seqan.test.test_strings.infix_maker(str_type)
-
seqan.test.test_strings.test_string_comparison()
-
seqan.test.test_strings.test_string_infix_types_different()
-
seqan.test.test_strings.test_string_infixes()
-
seqan.test.test_strings.test_string_reversecomplement()
-
seqan.test.test_strings.test_string_set_append()
-
seqan.test.test_strings.test_string_set_iteration()
-
seqan.test.test_strings.test_strings()
seqan.test.test_write_pgf module
Test writing a suffix tree as a PGF tree.
-
seqan.test.test_write_pgf.test_write_pgf()
Test writing a PGF representing a suffix tree.
Module contents
Generic setup code shared between tests.
-
seqan.test.append_to_path(d)
-
seqan.test.fasta_dir()
-
seqan.test.fasta_file(filename)
-
seqan.test.init_env(f, level=10)
Initialise test environment.
-
seqan.test.is_debug_python()
@return: True iff is a debug python.
-
seqan.test.log_path(level=10)
-
seqan.test.prepend_to_path(d)
-
seqan.test.show_shallow_tree(i)
-
seqan.test.update_path_for_seqan()