Classes and functions for working with wig/bigwig files

common.parsing_routines.wig_tools.py

This module contains routines for reading, parsing and summarizing data in wig files.

module_version:1.2 created_on:2013-11-22

Wig Tools

class parsing_routines.wig_tools.wigData(fname, isBigWig=False, path_to_binary='external_libraries/bigWigTowig', process_mode=1)

A simple class for representing the data in a wig file

class parsing_routines.wig_tools.wigTrack(trackdata)

A simple class for representing a chromosomes data from a wig file

parsing_routines.wig_tools.convert_BigWig2Wig(fname, path_to_binary='external_libraries/bigWigTowig')

uses the ecscigToWig to do the conversion, ready for reading