0.1.0 (2013-12-30)

changes since 0.0.3 (2013-10-21)

Bug Fixes

New Features

Changes

Security

Other Changes

  • added Apache license and code boilerplate to all source files and scripts [3d692ea0d5a2]
  • update default host to uta.invitae.com CNAME [605e6e399e5f]
  • updated README; added sbin/uta-shell [c3931dda575b]
  • #58: migrated uta to publicly-accessible RDS instance and updated uta defaults [d609a81d1ec9]
  • updated sbin/uta-pg-to-sqlite to include protein_hash and meta tables [bade1ac7f98c]
  • added sbin/fasta-hash-to-tsv [af8cdea82e96]
  • updated uta-pg-to-sqlite script to embed version number and name file (name no longer accepted from commandline) [cc8598eeedc8]
  • uta-pg-to-sqlite: order records and output loading info [785501f0e8d4]
  • use uta0 database by default (rather than reece’s db) [59d60c55cc35]
  • #62: synchronized setup files among UTA program components [4319672439a1]
  • updated README.rst [a2b81a989aff]
  • added jenkins target to makefile [7f509a0b2a0e]
  • bring back ez_setup [1b8cec6df88a]
  • Makefile: new rule ve-test to execute tests in a fresh ve (as in with jenkins) [779fc64e42d9]
  • removed localhost UTA_DB_URL setting in Makefile [e2948fc5577c]
  • changed NC_000014.10 to NC_000014.8 [8a0f92bd39ea]
  • added get_tx_seq() method [38424d1df2d9]
  • removed mapping code that now lives in hgvs [e353859717a1]
  • doc/ updates (incomplete) [4323c2a0fec1]
  • fetch-tx-* scripts: include gene name in response [c8b55ca6bcf5]
  • start feature branch [32732d3ea403]
  • fixed start <= end for negative coordinates [432b799d29db]
  • corrected NC number for ch14 in genomeutils [e8aea8436a46]
  • fixed ci_to_human with additonal logic checks [f547aa8355dc]
  • updating intron mapping coordinates [16bcb4919240]
  • format edits [bb25bc960fe3]
  • tests and bug fixes for offsets and strands [06d5e4a0fcdf]
  • transcriptmapper with offsets [4dc927d62610]
  • first offset commit [6d7f936c0304]
  • updated webservice index.html help [221cbbb5dfec]
  • fixed strand bug in webservice api hgvs to genomic coords [d475267ab253]
  • Created a web directory and moved the webservice in there for future expansion. Created a help page and additional API call for NM to genomic coords. Restructured the API links and versioned the URLs [6725c420f067]
  • added NEFL-dbSNP to the tests [c887969c51a6]