Index

A

addChild() (toil.job.Job method) addChildFn() (toil.job.Job method) addChildJobFn() (toil.job.Job method) addFollowOn() (toil.job.Job method)

addFollowOnFn() (toil.job.Job method) addFollowOnJobFn() (toil.job.Job method) addService() (toil.job.Job method) addToilOptions() (toil.job.Job.Runner static method)

C

checkJobGraphAcylic() (toil.job.Job method) checkJobGraphConnected() (toil.job.Job method)

checkJobGraphForDeadlocks() (toil.job.Job method)

D

deleteGlobalFile() (toil.job.Job.FileStore method)

E

encapsulate() (toil.job.Job method)

G

getDefaultOptions() (toil.job.Job.Runner static method) getEmptyFileStoreID() (toil.job.Job.FileStore method) getLocalTempDir() (toil.job.Job.FileStore method)

getRootJobs() (toil.job.Job method) getUserScript() (toil.job.Job method) globalFileExists() (toil.job.Job.FileStore method)

J

Job (class in toil.job) Job.FileStore (class in toil.job)

Job.Runner (class in toil.job)

L

logToMaster() (toil.job.Job.FileStore method)

R

readGlobalFile() (toil.job.Job.FileStore method) readGlobalFileStream() (toil.job.Job.FileStore method)

run() (toil.job.Job method) rv() (toil.job.Job method)

S

startToil() (toil.job.Job.Runner static method)

U

updateGlobalFile() (toil.job.Job.FileStore method)

updateGlobalFileStream() (toil.job.Job.FileStore method)

W

wrapFn() (toil.job.Job static method) wrapJobFn() (toil.job.Job static method)

writeGlobalFile() (toil.job.Job.FileStore method) writeGlobalFileStream() (toil.job.Job.FileStore method)