Index

A

add_intermediate_data_link() (savu.data.process_data.ProcessList method) add_process_citation() (savu.data.process_data.ProcessList method)

AstraRecon (class in savu.plugins.astra_recon)

B

base_recon (module), [1]

BaseRecon (class in savu.plugins.base_recon)

C

CitationInfomration (class in savu.data.process_data) complete() (savu.data.structures.Data method) cpu_plugin (module), [1]

CpuPlugin (class in savu.plugins.cpu_plugin) create_backing_h5() (savu.data.structures.ProjectionData method) (savu.data.structures.RawTimeseriesData method) (savu.data.structures.VolumeData method) create_output_data() (in module savu.plugins.utils)

D

Data (class in savu.data.structures)

E

external_link() (savu.data.structures.Data method)

F

Filter (class in savu.plugins.filter) filter (module), [1]

filter_frame() (savu.plugins.filter.Filter method) (savu.plugins.median_filter.MedianFilter method) find_args() (in module savu.plugins.utils)

G

get_citation_inforamtion() (savu.plugins.astra_recon.AstraRecon method) (savu.plugins.plugin.Plugin method) (savu.plugins.simple_fake_gpu_recon.SimpleFakeGpuRecon method) (savu.plugins.simple_recon.SimpleRecon method) (savu.plugins.vo_centering.VoCentering method) get_clusterd_frame_list() (savu.data.structures.RawTimeseriesData method) get_data_shape() (savu.data.structures.ProjectionData method) get_filter_frame_type() (savu.plugins.filter.Filter method) (savu.plugins.pass_through_plugin.PassThroughPlugin method) (savu.plugins.vo_centering.VoCentering method) get_filter_padding() (savu.plugins.filter.Filter method) (savu.plugins.median_filter.MedianFilter method) get_max_frames() (savu.plugins.filter.Filter method) (savu.plugins.pass_through_plugin.PassThroughPlugin method) (savu.plugins.vo_centering.VoCentering method) get_number_of_projections() (savu.data.structures.ProjectionData method) (savu.data.structures.RawTimeseriesData method) get_number_of_sinograms() (savu.data.structures.ProjectionData method)

get_projection_data() (in module savu.plugins.utils) get_projection_shape() (savu.data.structures.RawTimeseriesData method) get_raw_data() (in module savu.plugins.utils) get_slice_list() (savu.data.structures.Data method) get_volume_data() (in module savu.plugins.utils) get_volume_shape() (savu.data.structures.VolumeData method) gpu_plugin (module), [1] GpuPlugin (class in savu.plugins.gpu_plugin)

L

load_plugin() (in module savu.plugins.utils)

load_raw_data() (in module savu.plugins.utils)

M

median_3x3_filter (module), [1] MedianFilter (class in savu.plugins.median_filter)

module2class() (in module savu.plugins.utils)

O

output_data_type() (savu.plugins.base_recon.BaseRecon method) (savu.plugins.filter.Filter method) (savu.plugins.pass_through_plugin.PassThroughPlugin method) (savu.plugins.plugin.Plugin method) (savu.plugins.simple_fake_gpu_recon.SimpleFakeGpuRecon method) (savu.plugins.timeseries_field_corrections.TimeseriesFieldCorrections method)

P

PassThrough (class in savu.data.structures) PassThroughPlugin (class in savu.plugins.pass_through_plugin) Plugin (class in savu.plugins.plugin) plugin (module), [1], [2], [3] populate_default_parameters() (savu.plugins.plugin.Plugin method) (savu.plugins.simple_fake_gpu_recon.SimpleFakeGpuRecon method) populate_from_h5() (savu.data.structures.ProjectionData method) populate_from_nx_tomo() (savu.data.structures.RawTimeseriesData method)

populate_process_list() (savu.data.process_data.ProcessList method) process (module) process() (savu.plugins.base_recon.BaseRecon method) (savu.plugins.cpu_plugin.CpuPlugin method) (savu.plugins.filter.Filter method) (savu.plugins.gpu_plugin.GpuPlugin method) (savu.plugins.pass_through_plugin.PassThroughPlugin method) (savu.plugins.plugin.Plugin method) (savu.plugins.simple_fake_gpu_recon.SimpleFakeGpuRecon method) (savu.plugins.timeseries_field_corrections.TimeseriesFieldCorrections method) process_data (module), [1] process_frame() (savu.plugins.pass_through_plugin.PassThroughPlugin method) (savu.plugins.vo_centering.VoCentering method) ProcessList (class in savu.data.process_data) ProjectionData (class in savu.data.structures)

R

RawTimeseriesData (class in savu.data.structures) reconstruct() (savu.plugins.astra_recon.AstraRecon method) (savu.plugins.base_recon.BaseRecon method) (savu.plugins.simple_recon.SimpleRecon method) required_data_type() (savu.plugins.base_recon.BaseRecon method) (savu.plugins.filter.Filter method) (savu.plugins.pass_through_plugin.PassThroughPlugin method) (savu.plugins.plugin.Plugin method) (savu.plugins.simple_fake_gpu_recon.SimpleFakeGpuRecon method) (savu.plugins.timeseries_field_corrections.TimeseriesFieldCorrections method) (savu.plugins.vo_centering.VoCentering method) required_resource() (savu.plugins.timeseries_field_corrections.TimeseriesFieldCorrections method)

run_plugin_chain() (in module savu.core.process) run_process() (savu.plugins.cpu_plugin.CpuPlugin method) (savu.plugins.gpu_plugin.GpuPlugin method) run_process_list() (in module savu.core.process)

S

save_list_to_file() (savu.data.process_data.ProcessList method) savu (module) savu.core (module) savu.core.process (module) savu.data (module) savu.data.process_data (module) savu.data.structures (module) savu.plugins (module) savu.plugins.astra_recon (module) savu.plugins.base_recon (module) savu.plugins.cpu_plugin (module) savu.plugins.filter (module) savu.plugins.gpu_plugin (module) savu.plugins.median_filter (module)

savu.plugins.pass_through_plugin (module) savu.plugins.plugin (module) savu.plugins.simple_fake_gpu_recon (module) savu.plugins.simple_recon (module) savu.plugins.timeseries_field_corrections (module) savu.plugins.utils (module) savu.plugins.vo_centering (module) set_parameters() (savu.plugins.plugin.Plugin method) simple_recon (module), [1] SimpleFakeGpuRecon (class in savu.plugins.simple_fake_gpu_recon) SimpleRecon (class in savu.plugins.simple_recon) SliceAlwaysAvailableWrapper (class in savu.data.structures) SliceAvailableWrapper (class in savu.data.structures) structures (module), [1]

T

Timeseries_field_corrections (module), [1]

TimeseriesFieldCorrections (class in savu.plugins.timeseries_field_corrections)

U

utils (module), [1]

V

VoCentering (class in savu.plugins.vo_centering)

VolumeData (class in savu.data.structures)

W

write() (savu.data.process_data.CitationInfomration method)