PatchToMap.py File Reference

Namespaces
	PatchToMap
	Tool for mapping patch-scale RHESSys yearly output variables.

Variables
int	PatchToMap.INT_RESCALE = 100
tuple	PatchToMap.VARIABLE_EXPR_RE = re.compile(r'\b([a-zA-z][a-zA-Z0-9_\.]+)\b')
tuple	PatchToMap.RANDOM = random.randint(100000, 999999)
string	PatchToMap.RECLASS_MAP_TMP = "patchzonalstats_cover_{0}"
string	PatchToMap.STATS_MAP_TMP = "patchzonalstats_output_{0}"
list	PatchToMap.methods
tuple	PatchToMap.parser = argparse.ArgumentParser(description='Generate cummulative map of patch-scale RHESSys output variables')
string	PatchToMap.help = 'The configuration file.'
tuple	PatchToMap.args = parser.parse_args()
	PatchToMap.configFile = None
tuple	PatchToMap.context = Context(args.projectDir, configFile)
tuple	PatchToMap.metadata = RHESSysMetadata.readRHESSysEntries(context)
list	PatchToMap.patchFilepaths = []
list	PatchToMap.variables = ['patchID']
tuple	PatchToMap.m = VARIABLE_EXPR_RE.findall(args.outputVariable)
tuple	PatchToMap.tmpDir = tempfile.mkdtemp()
tuple	PatchToMap.reclassRule = os.path.join(tmpDir, 'reclass.rule')
tuple	PatchToMap.grassDbase = os.path.join(context.projectDir, metadata['grass_dbase'])
tuple	PatchToMap.grassConfig = GRASSConfig(context, grassDbase, metadata['grass_location'], metadata['grass_mapset'])
tuple	PatchToMap.grassLib = GRASSLib(grassConfig=grassConfig)
tuple	PatchToMap.result
list	PatchToMap.variablesList = []
tuple	PatchToMap.data = np.genfromtxt(patchFilepath, names=True)
list	PatchToMap.patchIDs = [ int(p) for p in data['patchID'] ]
tuple	PatchToMap.expr = VARIABLE_EXPR_RE.sub(r'data["\1"]', args.outputVariable)
list	PatchToMap.reclass_map = args.mapNames[i]
tuple	PatchToMap.reclass = open(reclassRule, 'w')