PatchToCumulativeMap.py File Reference

Namespaces
	PatchToCumulativeMap
	Tool for making cummulative maps of patch-scale RHESSys output variables.

Variables
tuple	PatchToCumulativeMap.PATCH_DAILY_RE = re.compile('^(.+_patch.daily)$')
tuple	PatchToCumulativeMap.VARIABLE_EXPR_RE = re.compile(r'\b([a-zA-z][a-zA-Z0-9_\.]+)\b')
string	PatchToCumulativeMap.RECLASS_MAP_TMP = "patchtomovietmp_%d"
tuple	PatchToCumulativeMap.parser = argparse.ArgumentParser(description='Generate cummulative map of patch-scale RHESSys output variables')
string	PatchToCumulativeMap.help = 'The configuration file.'
tuple	PatchToCumulativeMap.args = parser.parse_args()
	PatchToCumulativeMap.configFile = None
tuple	PatchToCumulativeMap.context = Context(args.projectDir, configFile)
tuple	PatchToCumulativeMap.metadata = RHESSysMetadata.readRHESSysEntries(context)
list	PatchToCumulativeMap.patchDailyFilepaths = []
list	PatchToCumulativeMap.outputFilePaths = []
tuple	PatchToCumulativeMap.outputDir = os.path.abspath(args.outputDir)
string	PatchToCumulativeMap.outputFile = "%s.png"
tuple	PatchToCumulativeMap.cdfFilepath = os.path.join(outputDir, args.cdfOutputfile)
list	PatchToCumulativeMap.variables = ['patchID']
tuple	PatchToCumulativeMap.m = VARIABLE_EXPR_RE.findall(args.outputVariable)
	PatchToCumulativeMap.title = args.mapTitle
tuple	PatchToCumulativeMap.tmpDir = tempfile.mkdtemp()
tuple	PatchToCumulativeMap.reclassRule = os.path.join(tmpDir, 'reclass.rule')
tuple	PatchToCumulativeMap.colorTable = os.path.join(tmpDir, 'color.rule')
tuple	PatchToCumulativeMap.grassDbase = os.path.join(context.projectDir, metadata['grass_dbase'])
tuple	PatchToCumulativeMap.grassConfig = GRASSConfig(context, grassDbase, metadata['grass_location'], metadata['grass_mapset'])
tuple	PatchToCumulativeMap.grassLib = GRASSLib(grassConfig=grassConfig)
tuple	PatchToCumulativeMap.result
list	PatchToCumulativeMap.variablesList = []
tuple	PatchToCumulativeMap.f = open(patchDailyFilepath)
tuple	PatchToCumulativeMap.data = RHESSysOutput.readColumnsFromPatchDailyFile(f, variables)
	PatchToCumulativeMap.patchIDs = None
	PatchToCumulativeMap.variable = None
list	PatchToCumulativeMap.dataForDate = data[key]
tuple	PatchToCumulativeMap.expr = VARIABLE_EXPR_RE.sub(r'np.array(dataForDate["\1"])', args.outputVariable)
int	PatchToCumulativeMap.max_val = 0
	PatchToCumulativeMap.max_idx = None
	PatchToCumulativeMap.max_patchID = None
list	PatchToCumulativeMap.normalizedVariables = []
list	PatchToCumulativeMap.outputFilePath = outputFilePaths[i]
tuple	PatchToCumulativeMap.reclass = open(reclassRule, 'w')
tuple	PatchToCumulativeMap.fig = plt.figure(figsize=(8, 6), dpi=80, tight_layout=True)
tuple	PatchToCumulativeMap.ax = fig.add_subplot(111)
float	PatchToCumulativeMap.min_val = 0.01
tuple	PatchToCumulativeMap.x = np.linspace(min_val, max_val, num=len(variablesList[0]))
list	PatchToCumulativeMap.data_plt = []
tuple	PatchToCumulativeMap.tmp_ecdf = sm.distributions.ECDF(var)
string	PatchToCumulativeMap.cdfFilepath_png = "%s.png"
string	PatchToCumulativeMap.cdfFilepath_pdf = "%s.pdf"