..
   Copyright 2014 Novartis Institutes for Biomedical Research

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.

Railroadtracks
==============

A toolkit to connect (D|R)NA-Seq steps

.. only:: html

   .. image:: _static/logo_rrt.png
      :scale: 30 %
      :align: center


.. only:: latex

   ```
   Copyright 2014-2015 Novartis Institutes for Biomedical Research

   Licensed under the Apache License, Version 2.0 (the "License");
   you may not use this file except in compliance with the License.
   You may obtain a copy of the License at

       http://www.apache.org/licenses/LICENSE-2.0

   Unless required by applicable law or agreed to in writing, software
   distributed under the License is distributed on an "AS IS" BASIS,
   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   See the License for the specific language governing permissions and
   limitations under the License.
    ```


.. toctree::
   :maxdepth: 2
	     
   introduction
   installation
   tutorial
   cookbook
   recipes
   model
   extensions
   unified_execution
   persistence


Index and tables
================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`