The pytram package

The pytram package is decprecated and no longer supported. We recommend to switch to PyEMMA.

This software offers the python interface to the TRAM methods family. TRAM (transition-based reweighting analysis method) is a collection of Markov state model (MSM) estimators for analysing multi-ensemble simulations. The pytram package is implemented mostly in NumPy and SciPy, with Cython-based C-extensions for numerically demanding tasks. For documentation of the API, please have a look at the API documentation. To install this software and additional dependencies refer to the Installation Guide. The User Guide is a good starting point to learn how to use TRAM. For support/bug reports/sugguestions/complains, please visit us at GitHub.