Version History¶

1.1.3 (2014/08/22)¶

*New release for PyPi with bug fixes

Added support for latest GATK version

Added GATK Group Variant Calling pipeline

Added noncoding RNA HTseq module

AMI memory handling

Fixed Sumatra parameters file handling

RNAseq count based pipeline produces single report for all samples

First public release!

Added Sumatra for logging of each run to Sumatra database

Added reading samples from a text file

Added AWS distribution and docs

Import modules for utils.py sumatra and hgapi

Added TCGA download support