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Table Of Contents
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.. toctree::
	
	Omics Pipe <index>
	about
	installation
	AWS_installation
	tutorial
	parameter_file
	custom_pipelines
	adding_modules
	pipelines
	
	databases
	dependencies
	resources
	
	RNAseq_Tuxedo_Modules
	RNAseq_counts_modules
	RNAseq_cancer_modules
	RNAseq_cancer_modules_TCGA
	RNAseq_counts_modules_TCGA
	miRNAseq_Tuxedo_Modules
	miRNAseq_counts_modules
	ChIPseq_modules_HOMER
	ChIPseq_modules_MACS
	WGS_WES_modules
	mutect_modules
	all_modules
	
	history
	copyright